Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq2810 129 1e-27 seq32979 104 4e-20 seq34189 80.6 4e-13 >seq2810 Length=20389 Score = 129 bits (142), Expect = 1e-27 Identities = 204/289 (71%), Gaps = 9/289 (3%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||| |||||||| |||||||||| || |||| | | |||||||| ||| || Sbjct 10275 CCCATGCTTTCGCACCTCAGCGTCGGTAGGGACCCAGAGAGCTGCCTTCGCTTTTGGCGT 10334 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTA-CACACGGAATTCCGATTGCCTCTCCAGCA 119 |||| || |||| | |||||||| ||| |||||| |||||| | ||||| || Sbjct 10335 TCCTTCGCGGATCTCAGGATTTCACCCCTAACACACGAAATTCCACTCTCCTCTGTCTCA 10394 Query 120 CTCAAGAAAAACAGTTTCAAATGCAG---GCTATGGGTTGAGCCCATAGTTTTCACATCT 176 |||||| || ||||| | ||| || | | || | | | |||||| | Sbjct 10395 CTCAAGTGAATTGGTTTCGAGAGCATTCCGCCA--GTTTTTGGCGAC---TTTCACTTTC 10449 Query 177 GACTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACC 236 || | | |||||||| ||||||||| |||| | | |||| | ||| |||||| || Sbjct 10450 AACCCGATTCACCGCCTACGTGCCCTTTACGCCCAGTCATTCCGAAGAACACTTGCCCCC 10509 Query 237 TACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTC 285 ||| |||||||||||||||||||| ||||||||| ||||| |||||| Sbjct 10510 CCCGTCTTACCGCGGCTGCTGGCACGGAGTTAGCCGGGGCTTCTTCCTC 10558 >seq32979 Length=37524 Score = 104 bits (114), Expect = 4e-20 Identities = 194/285 (68%), Gaps = 0/285 (0%) Strand=Plus/Plus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| || || ||||| | | |||||| | |||||| |||||||| | Sbjct 23701 GCTTTCGTCTCTTAGTATCAGTGTCGGCCCAGCAGAGTGTTTTCGCCGTTGGTGTTCTTT 23760 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 | || |||| ||||||||||||| || |||||| |||| || | | |||| || Sbjct 23761 CCGATCTCTATGCATTTCACCGCTCTACCGAAAATTCCTTCTGCCCCTACCGTACTCCAG 23820 Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185 |||||| | || | |||||||||| | ||| || | ||||| Sbjct 23821 CTTGGTAGTTTCCACCGCCTGTCCAGGGTTGAGCCTTGGGATTTGACGACGGACTTAAAA 23880 Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTA 245 || |||||| | |||| |||||| |||||||||||||||| ||| |||||| Sbjct 23881 AGCCACCTACAAAAGCATTACGCCCAATCGTTCCGGATAACGCTTGCATCCTCTGTATTA 23940 Query 246 CCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 ||| |||| ||||||| ||||||||| |||||||| ||| || Sbjct 23941 CCGTGGCTACTGGCACAGAGTTAGCCGATGCTTATTCGCCAGATA 23985 >seq34189 Length=425456 Score = 80.6 bits (88), Expect = 4e-13 Identities = 64/77 (83%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 191 CCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCG 250 |||||| | |||||| |||||| | |||||||||||||||| | | ||||||||||| Sbjct 150937 CCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCTTCTGTATTACCGCG 150996 Query 251 GCTGCTGGCACGTAGTT 267 ||||||||||| |||| Sbjct 150997 GCTGCTGGCACAGAGTT 151013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828178555400