Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq5802 102 8e-20 seq5286 84.2 2e-14 seq7551 82.4 8e-14 seq1785 82.4 8e-14 seq6545 73.4 4e-11 seq5426 73.4 4e-11 >seq5802 Length=2655 Score = 102 bits (112), Expect = 8e-20 Identities = 124/165 (75%), Gaps = 3/165 (2%) Strand=Plus/Plus Query 26 AATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGGAATAATAGAATAG 84 |||||||| | |||||||| |||| |||| | |||||||| ||||| |||| | |||| Sbjct 1 AATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCATGGGATAACATTATAG 60 Query 85 GACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAAATACGGATAGTC 144 || | |||| ||||| || | | ||| || |||||||| || | ||| |||| Sbjct 61 GATTT-CGGTCCTATTACGTTGTCCTTCGGGATCGGA-GTAATGATTAACAGGGACAGTC 118 Query 145 GGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 ||||| | ||||| || |||| |||||||||||||||||||| Sbjct 119 GGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 163 >seq5286 Length=2650 Score = 84.2 bits (92), Expect = 2e-14 Identities = 100/133 (75%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 58 ATACATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGAC 117 |||||||| ||||| |||| | |||||| | |||| ||||| || || | ||| Sbjct 2649 ATACATTAGCATGGGATAACATTATAGGATTT-CGGTCCTATTACGTTGGCCTTCGGGAT 2591 Query 118 CGCCCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAA 177 || | |||||| || | ||||||||||||| | ||||| || |||| |||||||| Sbjct 2590 CGGA-GAAATGATTAACAGGGATAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAA 2532 Query 178 TTCTTGGATTTAT 190 ||||||||||||| Sbjct 2531 TTCTTGGATTTAT 2519 >seq7551 Length=2672 Score = 82.4 bits (90), Expect = 8e-14 Identities = 108/146 (74%), Gaps = 3/146 (2%) Strand=Plus/Plus Query 46 GCCTTTGCTC-GAATACATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGT 104 |||| |||| | |||||||| ||||| |||| | |||||| | |||| ||||| || Sbjct 2 GCCTACGCTCTGTATACATTAGCATGGGATAACATTATAGGATTT-CGGTCCTATTACGT 60 Query 105 AGGTTTCTAGGACCGCCCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATT 164 || | ||| || |||| ||| || | ||| ||||||||| | ||||| || Sbjct 61 TGGCCTTCGGGATCGGA-GTAACGATTAACAGGGACAGTCGGGGGCATTCGTATTTCATA 119 Query 165 GTCAAAGGTGAAATTCTTGGATTTAT 190 |||| ||||||||||||||||||||| Sbjct 120 GTCAGAGGTGAAATTCTTGGATTTAT 145 >seq1785 Length=10100 Score = 82.4 bits (90), Expect = 8e-14 Identities = 113/154 (73%), Gaps = 3/154 (2%) Strand=Plus/Plus Query 38 CAAAGCAGGCCTTTGCTC-GAATACATTACCATGGAATAATAGAATAGGACGTGCGGTTC 96 ||||||| |||| |||| | |||||||| ||||| |||| | ||| || | |||| | Sbjct 9938 CAAAGCAAGCCTACGCTCTGTATACATTAGCATGGGATAACATTATATGATTT-CGGTCC 9996 Query 97 TATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAAATACGGATAGTCGGGGGTGTCAGT 156 |||| || || | ||| | |||||||| || | ||| ||||||||| | || Sbjct 9997 TATTACGTTGGCCTTCGGGATCTGA-GTAATGATTAACAGGGACAGTCGGGGGCATTCGT 10055 Query 157 ATTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190 ||| | |||| ||||||||||||||||||||| Sbjct 10056 ATTTCTTAGTCAGAGGTGAAATTCTTGGATTTAT 10089 >seq6545 Length=2662 Score = 73.4 bits (80), Expect = 4e-11 Identities = 57/68 (84%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 123 GTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTT 182 |||||||| || | ||| ||||||||| | |||||| || |||| ||||||||||||| Sbjct 2612 GTAATGATTAACAGGGACAGTCGGGGGCATTAGTATTTCATAGTCAGAGGTGAAATTCTT 2553 Query 183 GGATTTAT 190 |||||||| Sbjct 2552 GGATTTAT 2545 >seq5426 Length=2651 Score = 73.4 bits (80), Expect = 4e-11 Identities = 57/68 (84%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 123 GTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTT 182 |||||||| || | ||| ||||||||| | ||||| ||| |||| ||||||||||||| Sbjct 2608 GTAATGATTAACAGGGACAGTCGGGGGCATTCGTATTTAATAGTCAGAGGTGAAATTCTT 2549 Query 183 GGATTTAT 190 |||||||| Sbjct 2548 GGATTTAT 2541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511616096000