Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq27302 199 6e-49 seq33404 179 6e-43 seq32976 167 4e-39 seq33937 165 1e-38 seq33959 138 2e-30 seq29674 111 2e-22 seq31369 73.4 6e-11 >seq27302 Length=20257 Score = 199 bits (220), Expect = 6e-49 Identities = 195/251 (78%), Gaps = 4/251 (2%) Strand=Plus/Minus Query 29 CAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGC 88 |||| || | || | | ||||||||| ||| || ||| |||||| ||||| ||| | Sbjct 10692 CAGCAGTTCTTCCATACCAACTTAGCTGCCCGGCGCTGCTATTGGCATAACAACCGGTAC 10633 Query 89 ACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCT- 147 |||| ||||| | ||| ||| |||||||||||||| || ||||||| || | ||| Sbjct 10632 ACCATAGGTTGGCCCAACCCAGTCCTCTCGTACTAGGGTTGGCTCCTCGCAGTTCTCCCT 10573 Query 148 ---ACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGT 204 || || ||| |||||| ||||||||||||| ||||||||| |||||| ||| ||| Sbjct 10572 TTAACACCAACGGTAGATAGGAACCGAACTGTCTCACGACGTTCTAAACCCAACTCACGT 10513 Query 205 GCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACG 264 || ||| ||| |||||||| || |||||||||||||| ||||| |||||||||| || | Sbjct 10512 ACCACTTGAATCGGCGAACAACCGAACCCTTGGGACCTTCTTCAACCCCAGGATGTGATG 10453 Query 265 AGCCGACATCG 275 || |||||||| Sbjct 10452 AGTCGACATCG 10442 >seq33404 Length=130495 Score = 179 bits (198), Expect = 6e-43 Identities = 155/192 (81%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 84 GGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATT 143 ||| ||||| | || ||||| || |||||||||||||||| ||| || |||||| || Sbjct 102070 GGTACACCAAAAGTGTGTCCTTCTCGGTCCTCTCGTACTAGGGAAAGGTCCTCTTAATGC 102129 Query 144 TCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCG 203 || |||||||| |||||| |||| | ||| |||| ||||||| | |||| ||||| | Sbjct 102130 TCTAACGCCCACATCGGATATGGACTGGACTCTCTCACGACGTTATAAACCTAGCTCACA 102189 Query 204 TGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGAC 263 | || |||||||||||||| |||||||||||||| || |||| |||||||||| | || Sbjct 102190 TACCGCTTTAATGGGCGAATAGCCCAACCCTTGGAACATACTACAGCCCCAGGTGGCGAA 102249 Query 264 GAGCCGACATCG 275 |||||||||||| Sbjct 102250 GAGCCGACATCG 102261 >seq32976 Length=53184 Score = 167 bits (184), Expect = 4e-39 Identities = 141/176 (80%), Gaps = 11/176 (6%) Strand=Plus/Plus Query 100 GTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACG 159 |||| ||||||||||||||||||| ||| || ||||||||| || |||||||| || Sbjct 32034 GTCCTTCCCGGTCCTCTCGTACTAGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCG 32093 Query 160 GATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGC 219 |||| ||||||||||||| ||||||||||| ||| || ||||||||||| Sbjct 32094 GATATGGACCGAACTGTCN-----------GAACCCAGCTCACGTACCGCTTTAATGGGC 32142 Query 220 GAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 |||||||||||||||||| || |||| |||||||||| | || ||||||| |||| Sbjct 32143 GAACAGCCCAACCCTTGGAACATACTGCAGCCCCAGGTGGCGAAGAGCCGATATCG 32198 >seq33937 Length=89248 Score = 165 bits (182), Expect = 1e-38 Identities = 163/211 (77%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 65 TGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAA 124 |||| | |||| | || |||| |||||||||| |||| | || |||||||||||||| Sbjct 31635 TGCAATGGGCACGATAATTGGTACACCAGAGGTGCGTCCTTTCCAGTCCTCTCGTACTAG 31694 Query 125 GGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGAC 184 ||| || ||||||||| || | |||||| | ||| ||||| ||||||||| ||| Sbjct 31695 GGAAAGGTCCTCTCAATGCTCTAATGCCCACACCAAATATGGACCAAACTGTCTCATGAC 31754 Query 185 GTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTAC 244 ||||| |||||||||| |||| ||| |||||||||||||||||||||||| | ||| Sbjct 31755 GTTCTAAACCCAGCTCATATGCCGCTTGAATGGGCGAACAGCCCAACCCTTGAAGCATAC 31814 Query 245 TTCAGCCCCAGGATGAGACGAGCCGACATCG 275 | || |||||| | || |||| |||||| Sbjct 31815 TACAATCCCAGGTGGCGAAGAGCTCACATCG 31845 >seq33959 Length=71220 Score = 138 bits (152), Expect = 2e-30 Identities = 182/251 (73%), Gaps = 5/251 (2%) Strand=Plus/Minus Query 29 CAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGC 88 |||| || | | || | ||||||| | ||| | || |||||| |||| ||| | Sbjct 37461 CAGCAGTTCTTCTTTACCAACTTAGATACCCGACGTTGTTATTGGCATAACAATCGGTAC 37402 Query 89 ACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCT- 147 |||| | ||| | ||| ||| ||| |||||||||| || ||||| || || | ||| Sbjct 37401 ACCATAAGTTGGCCCAACCCAGTCATCTCGTACTAGGGTTAGCTCATCGCAGTTCTCCCT 37342 Query 148 ---ACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGT 204 || || ||| |||||| | |||| |||||| |||| |||| |||||| |||| || Sbjct 37341 TTAACACCAACGGTAGATAGGAATCGAATTGTCTCACGACATTCTAAACCCAACTCGTGT 37282 Query 205 GCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACG 264 || ||| ||| | ||||| || |||||||||||||| ||||| ||||||||| || | Sbjct 37281 ACCACTTGAATAAGTGAACAACCGAACCCTTGGGACCTTCTTCA-ACCCAGGATGTGATG 37223 Query 265 AGCCGACATCG 275 ||| | ||||| Sbjct 37222 AGCTGGCATCG 37212 >seq29674 Length=9909 Score = 111 bits (122), Expect = 2e-22 Identities = 107/136 (79%), Gaps = 1/136 (1%) Strand=Plus/Plus Query 6 AGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC-TA 64 ||||||| ||||||||| |||||| |||||| ||| |||| ||| |||||| | Sbjct 9621 AGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCGTT 9680 Query 65 TGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAA 124 | | | |||| | ||||||| |||||||||| |||| ||||||||||||||||||| Sbjct 9681 TACCGTGGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACTAG 9740 Query 125 GGACAGCTCCTCTCAA 140 ||| || ||||||||| Sbjct 9741 GGAAAGGTCCTCTCAA 9756 >seq31369 Length=52047 Score = 73.4 bits (80), Expect = 6e-11 Identities = 57/68 (84%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 202 CGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAG 261 ||| || ||| ||| |||||||| || |||||||||||||| ||||| |||||||||| | Sbjct 17465 CGTACCACTTGAATCGGCGAACAACCGAACCCTTGGGACCTTCTTCAACCCCAGGATGTG 17406 Query 262 ACGAGCCG 269 | ||| || Sbjct 17405 ATGAGGCG 17398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780214546400