Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq34055 192 1e-46 seq33632 181 3e-43 seq2810 170 5e-40 seq34035 104 6e-20 seq33510 82.4 2e-13 seq32326 80.6 7e-13 >seq34055 Length=92358 Score = 192 bits (212), Expect = 1e-46 Identities = 158/191 (83%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || ||||| ||||||| | | |||||||||| |||||| |||||| |||||||| Sbjct 8492 TTCACGACCCGTGGGCCTTCGACCTCCACGCGGCATTGCTGCAA-AGGCTTTCGCCCATT 8550 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | | || |||||||||||||||||||| | ||||||||| |||||||||| | ||||||| Sbjct 8551 GCGGAAAATTCCCCACTGCTGCCTCCCATGGGAGTCTGGGCCGTGTCTCAATCCCAGTGT 8610 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||||| |||||||||| ||||||||| |||| |||||| ||| || ||| || | ||| Sbjct 8611 GGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCA 8670 Query 185 ACTAGCTAATC 195 |||||||| || Sbjct 8671 ACTAGCTATTC 8681 >seq33632 Length=88754 Score = 181 bits (200), Expect = 3e-43 Identities = 138/163 (85%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || || || |||||||| | | |||||||||| ||| | ||| |||| |||||||| Sbjct 21725 TTCACGACTCGTGGGCCTTCTACCTCCACGCGGCATTGCTCCGTCAAGCTTTCGCCCATT 21784 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | | || |||||||||| ||||| ||||||||||||||| |||||||||||| ||||||| Sbjct 21785 GCGGAAAATTCCCCACTACTGCCACCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 21844 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGT 167 ||||| |||||||||||||||||||| |||| |||||| ||| Sbjct 21845 GGCTGATCATCCTCTCAGACCAGCTACTGATCATCGCCTTGGT 21887 >seq2810 Length=20389 Score = 170 bits (188), Expect = 5e-40 Identities = 154/193 (80%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 4 CTTTACAACCCGAA--GGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCC 61 |||||||| | | | | ||||||||| |||||| || |||| ||| ||||| ||||| Sbjct 19819 CTTTACAAGCGGCACTGCCCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCC 19878 Query 62 ATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 121 ||||| ||| |||||||||||||||| ||||| |||||| || |||||||||||| |||| Sbjct 19879 ATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAG 19938 Query 122 TGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCG 181 |||||||| |||||| |||||||||| | ||| | | || ||| ||| ||||| Sbjct 19939 TGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCTGA 19998 Query 182 CCAACTAGCTAAT 194 ||||||| ||||| Sbjct 19999 CCAACTACCTAAT 20011 >seq34035 Length=91046 Score = 104 bits (114), Expect = 6e-20 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 42 GCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCT 101 ||| | |||||||| ||||||||| | || |||| ||||||||||||||||||||||||| Sbjct 50478 GCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCTCCACTGCTGCCTCCCGTAGGAGTCT 50537 Query 102 GGACCGTGTCTCAGT 116 ||||||||||||||| Sbjct 50538 GGACCGTGTCTCAGT 50552 >seq33510 Length=50102 Score = 82.4 bits (90), Expect = 2e-13 Identities = 100/137 (73%), Gaps = 11/137 (8%) Strand=Plus/Minus Query 62 ATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 121 |||| | || ||| || ||| || ||||| |||||||| ||| |||||||||| | |||| Sbjct 22147 ATTGCGAAAAATTTCCAACTACTACCTCCTGTAGGAGTTTGGGCCGTGTCTCAATCCCAG 22088 Query 122 TGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCG 181 |||| ||| |||| ||||| ||||| || |||| | ||| | ||| || | Sbjct 22087 TGTGACTGATCATTCTCTCGGACCATCT--------TCGCATTGGTAAGATATTCCCTCA 22036 Query 182 ---CCAACTAGCTAATC 195 |||||||||||||| Sbjct 22035 TCACCAACTAGCTAATC 22019 >seq32326 Length=27666 Score = 80.6 bits (88), Expect = 7e-13 Identities = 50/54 (93%), Gaps = 0/54 (0%) Strand=Plus/Minus Query 48 TCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCT 101 |||||||| ||||||||| | || |||||||||||||||||||||||||||||| Sbjct 6808 TCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCT 6755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1221453862400