Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07]
77,400 sequences; 512,990,763 total letters
Query= AAMG01002175.1
Length=414
Score E
Sequences producing significant alignments: (Bits) Value
seq34055 192 1e-46
seq33632 181 3e-43
seq2810 170 5e-40
seq34035 104 6e-20
seq33510 82.4 2e-13
seq32326 80.6 7e-13
>seq34055
Length=92358
Score = 192 bits (212), Expect = 1e-46
Identities = 158/191 (83%), Gaps = 1/191 (1%)
Strand=Plus/Plus
Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64
|| || ||||| ||||||| | | |||||||||| |||||| |||||| ||||||||
Sbjct 8492 TTCACGACCCGTGGGCCTTCGACCTCCACGCGGCATTGCTGCAA-AGGCTTTCGCCCATT 8550
Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124
| | || |||||||||||||||||||| | ||||||||| |||||||||| | |||||||
Sbjct 8551 GCGGAAAATTCCCCACTGCTGCCTCCCATGGGAGTCTGGGCCGTGTCTCAATCCCAGTGT 8610
Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184
||||| |||||||||| ||||||||| |||| |||||| ||| || ||| || | |||
Sbjct 8611 GGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCA 8670
Query 185 ACTAGCTAATC 195
|||||||| ||
Sbjct 8671 ACTAGCTATTC 8681
>seq33632
Length=88754
Score = 181 bits (200), Expect = 3e-43
Identities = 138/163 (85%), Gaps = 0/163 (0%)
Strand=Plus/Plus
Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64
|| || || || |||||||| | | |||||||||| ||| | ||| |||| ||||||||
Sbjct 21725 TTCACGACTCGTGGGCCTTCTACCTCCACGCGGCATTGCTCCGTCAAGCTTTCGCCCATT 21784
Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124
| | || |||||||||| ||||| ||||||||||||||| |||||||||||| |||||||
Sbjct 21785 GCGGAAAATTCCCCACTACTGCCACCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 21844
Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGT 167
||||| |||||||||||||||||||| |||| |||||| |||
Sbjct 21845 GGCTGATCATCCTCTCAGACCAGCTACTGATCATCGCCTTGGT 21887
>seq2810
Length=20389
Score = 170 bits (188), Expect = 5e-40
Identities = 154/193 (80%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 4 CTTTACAACCCGAA--GGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCC 61
|||||||| | | | | ||||||||| |||||| || |||| ||| ||||| |||||
Sbjct 19819 CTTTACAAGCGGCACTGCCCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCC 19878
Query 62 ATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 121
||||| ||| |||||||||||||||| ||||| |||||| || |||||||||||| ||||
Sbjct 19879 ATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAG 19938
Query 122 TGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCG 181
|||||||| |||||| |||||||||| | ||| | | || ||| ||| |||||
Sbjct 19939 TGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCTGA 19998
Query 182 CCAACTAGCTAAT 194
||||||| |||||
Sbjct 19999 CCAACTACCTAAT 20011
>seq34035
Length=91046
Score = 104 bits (114), Expect = 6e-20
Identities = 68/75 (91%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 42 GCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCT 101
||| | |||||||| ||||||||| | || |||| |||||||||||||||||||||||||
Sbjct 50478 GCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCTCCACTGCTGCCTCCCGTAGGAGTCT 50537
Query 102 GGACCGTGTCTCAGT 116
|||||||||||||||
Sbjct 50538 GGACCGTGTCTCAGT 50552
>seq33510
Length=50102
Score = 82.4 bits (90), Expect = 2e-13
Identities = 100/137 (73%), Gaps = 11/137 (8%)
Strand=Plus/Minus
Query 62 ATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 121
|||| | || ||| || ||| || ||||| |||||||| ||| |||||||||| | ||||
Sbjct 22147 ATTGCGAAAAATTTCCAACTACTACCTCCTGTAGGAGTTTGGGCCGTGTCTCAATCCCAG 22088
Query 122 TGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCG 181
|||| ||| |||| ||||| ||||| || |||| | ||| | ||| || |
Sbjct 22087 TGTGACTGATCATTCTCTCGGACCATCT--------TCGCATTGGTAAGATATTCCCTCA 22036
Query 182 ---CCAACTAGCTAATC 195
||||||||||||||
Sbjct 22035 TCACCAACTAGCTAATC 22019
>seq32326
Length=27666
Score = 80.6 bits (88), Expect = 7e-13
Identities = 50/54 (93%), Gaps = 0/54 (0%)
Strand=Plus/Minus
Query 48 TCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCT 101
|||||||| ||||||||| | || ||||||||||||||||||||||||||||||
Sbjct 6808 TCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCT 6755
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1221453862400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |