Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq2810 228 2e-57 seq34055 210 7e-52 seq33632 197 4e-48 seq32979 132 1e-28 seq34035 102 2e-19 seq33510 89.7 2e-15 seq1721 86.0 2e-14 seq34189 77.0 1e-11 seq32326 77.0 1e-11 >seq2810 Length=20389 Score = 228 bits (252), Expect = 2e-57 Identities = 216/274 (79%), Gaps = 4/274 (1%) Strand=Plus/Minus Query 168 ATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGG 227 ||||| |||||||| |||||| |||| |||||| | | ||| |||| | || || Sbjct 20011 ATTAGGTAGTTGGTCAGGTAAAGGCTGACCAAGCCAATGATGCTTAGCTGGTCTTTTCGG 19952 Query 228 GTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGG 287 ||||| |||||| ||| |||||||||||| || ||||| ||||| ||||||||||||| Sbjct 19951 ATGATCAGCCACACTGGGACTGAGACACGGCCCGGACTCCCACGGGGGGCAGCAGTGGGG 19892 Query 288 AATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCC--T 345 ||| ||| ||||||||| |||||| ||| |||||| |||||||| || ||||| | | Sbjct 19891 AATCTTGGACAATGGGCGAAAGCCCGATCCAGCAATATCGCGTGAGTGAAGAAGGGCAGT 19832 Query 346 TCGGGTCGTAAAGCTCTGTCCTCAA--GGAAGATAATGACGGTACTTGAGGAGGAAGCCC 403 | | | |||||||||| || || | | ||| ||||| | ||| ||||| ||||||| Sbjct 19831 GCCGCTTGTAAAGCTCTTTCGTCGAGTGCGCGATCATGACAGGACTCGAGGAAGAAGCCC 19772 Query 404 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACG 437 ||||||||| |||||||||||||||||||| ||| Sbjct 19771 CGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACG 19738 Score = 125 bits (138), Expect = 2e-26 Identities = 98/116 (84%), Gaps = 1/116 (1%) Strand=Plus/Minus Query 375 GATAATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAAT 434 ||| ||||| | ||| ||||| |||||||||||||||| |||||||||||||||||||| Sbjct 10574 GATCATGACAGGACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAG 10515 Query 435 ACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGT 490 ||| |||||| || ||| | |||||| ||| |||||||||||| |||||| ||| Sbjct 10514 ACGGGGGGGGCAAGTGTTCTTCGGAATGACT-GGGCGTAAAGGGCACGTAGGCGGT 10460 >seq34055 Length=92358 Score = 210 bits (232), Expect = 7e-52 Identities = 266/367 (72%), Gaps = 33/367 (9%) Strand=Plus/Minus Query 165 CTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAG 224 |||| |||||||||||| ||| || |||||||||||||| |||||||||| | | ||| Sbjct 8683 CTGAATAGCTAGTTGGTGAGGCAATAGCTTACCAAGGCGATGATCAGTAGCTGGTCCGAG 8624 Query 225 AGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTG 284 ||| ||||| |||||| ||| | |||||||||| ||| ||||| | |||||||||||||| Sbjct 8623 AGGATGATCAGCCACACTGGGATTGAGACACGGCCCAGACTCCCATGGGAGGCAGCAGTG 8564 Query 285 GGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCC 344 |||||| || | |||||||| ||||||| |||||||| |||||||| | ||||||| Sbjct 8563 GGGAATTTTCCGCAATGGGCGAAAGCCT-TTGCAGCAATGCCGCGTGGAGGTCGAAGGCC 8505 Query 345 TTCGGGTCGTAAAGCTCT---------------GTCCTCAA-------------GGAAGA 376 |||||||| || ||| ||| | || ||||| Sbjct 8504 CACGGGTCGTGAACTTCTTTTTCAGGCCGACGGGTCGTGAACTTCTTTTTCACGAGAAGA 8445 Query 377 --TAATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAAT 434 |||||||||| || ||| |||| | ||||||| |||||| | ||||| ||||| Sbjct 8444 AGCAATGACGGTATCTGGGGAATAAGCATCTGCTAACTCTGTGCCAACCGCCGCAGTAAT 8385 Query 435 ACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGC-GTAGGTGGTTTC 493 || ||| || ||| |||| |||||| | | |||||| ||| || ||||||| || Sbjct 8384 ACAGAGGATGCAAGCTTTATTCGGAATGA-TTGGGCGTGTAGGTGGCTTTAGGTGGCTTT 8326 Query 494 TTAAGTC 500 ||||||| Sbjct 8325 TTAAGTC 8319 >seq33632 Length=88754 Score = 197 bits (218), Expect = 4e-48 Identities = 184/233 (79%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 193 TTACCAAGGCGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGA 252 |||||||||||| |||||||||| | |||||||| ||||| |||||| ||| ||||||| Sbjct 21889 TTACCAAGGCGATGATCAGTAGCTGGTCTGAGAGGATGATCAGCCACACTGGGACTGAGA 21830 Query 253 CACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCT 312 ||||| ||| ||||||||||| ||||| |||||||||| || | |||||||| ||||| | Sbjct 21829 CACGGCCCAGACTCCTACGGGTGGCAGTAGTGGGGAATTTTCCGCAATGGGCGAAAGCTT 21770 Query 313 GATGCAGCAACGCCGCGTGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGG 372 || | ||||| |||||||| | ||||||| || ||||| || | | | | | | Sbjct 21769 GACGGAGCAATGCCGCGTGGAGGTAGAAGGCCCACGAGTCGTGAACTTTTTTTCCCGGAG 21710 Query 373 AAGA--TAATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCA 423 |||| |||||||||| |||||| |||| ||||||||| ||||||||| Sbjct 21709 AAGAAGCAATGACGGTATCTGAGGAATAAGCATCGGCTAACTCTGTGCCAGCA 21657 >seq32979 Length=37524 Score = 132 bits (146), Expect = 1e-28 Identities = 153/204 (75%), Gaps = 3/204 (1%) Strand=Plus/Minus Query 299 ATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCCTTCGGGTCGTAAAG 358 |||||| ||||||||| | ||||| |||||||| | ||| ||| |||||||| || Sbjct 24074 ATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGGAGGTAGAAAGCCCACGGGTCGTGAAC 24015 Query 359 CTCTGTCCTCAAGGAAGAT--AATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGT 416 ||| | ||| ||||| |||||||||| || || |||| ||||||||| || Sbjct 24014 TTCTTTTCTCGGAGAAGAACCAATGACGGTATCTGGCGAATAAGCATCGGCTAACTCTGT 23955 Query 417 GCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAG 476 ||||| |||| ||||||||| ||| || |||||||||||||| | | |||||||| | Sbjct 23954 GCCAGTAGCCACGGTAATACAGAGGATGCAAGCGTTATCCGGAACGA-TTGGGCGTAATG 23896 Query 477 GGTGCGTAGGTGGTTTCTTAAGTC 500 | |||||||| || ||||||| Sbjct 23895 CTTTTGTAGGTGGCTTTTTAAGTC 23872 >seq34035 Length=91046 Score = 102 bits (112), Expect = 2e-19 Identities = 71/81 (88%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 246 ACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCA 305 |||||||||||||||| ||||||||||||||||||||||| |||| || | |||||||| Sbjct 50552 ACTGAGACACGGTCCAGACTCCTACGGGAGGCAGCAGTGGAGAATTTTCCGCAATGGGCG 50493 Query 306 AAAGCCTGATGCAGCAACGCC 326 ||||||||| | ||| || || Sbjct 50492 AAAGCCTGACGGAGCGACACC 50472 >seq33510 Length=50102 Score = 89.7 bits (98), Expect = 2e-15 Identities = 107/144 (74%), Gaps = 11/144 (8%) Strand=Plus/Plus Query 160 CGCGTCTGATTAGCTAGTTGGTAA---GGTAACGGCTTACCAAGGCGACGATCAGTAGCC 216 || ||||||||||||||||||| | || || |||||||| |||| ||| Sbjct 22012 CGGGTCTGATTAGCTAGTTGGTGATGAGGGAATATCTTACCAATGCGAAGATG------- 22064 Query 217 GACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGG 276 | || ||||| ||||| | |||| ||| | |||||||||| |||||||||||| ||||| Sbjct 22065 GTCC-GAGAGAATGATCAGTCACACTGGGATTGAGACACGGCCCAAACTCCTACAGGAGG 22123 Query 277 CAGCAGTGGGGAATATTGCACAAT 300 || ||| || ||| || | |||| Sbjct 22124 TAGTAGTTGGAAATTTTTCGCAAT 22147 >seq1721 Length=20302 Score = 86.0 bits (94), Expect = 2e-14 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 375 GATAATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAAT 434 ||| ||||| | ||| ||||| |||||||||||||||| |||||||||||||||||||| Sbjct 20288 GATCATGACAGGACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAG 20229 Query 435 ACGTAGGGGGCTAG 448 ||| ||| ||||| Sbjct 20228 ACG-GGGGTGCTAG 20216 >seq34189 Length=425456 Score = 77.0 bits (84), Expect = 1e-11 Identities = 65/79 (82%), Gaps = 1/79 (1%) Strand=Plus/Minus Query 409 AACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGG 468 |||| |||||||||||||||||||||| | | || ||||||||||||||| | | || Sbjct 151013 AACTCTGTGCCAGCAGCCGCGGTAATACAGAAGATGCAAGCGTTATCCGGAATGA-TTGG 150955 Query 469 GCGTAAAGGGTGCGTAGGT 487 |||||||| || |||||| Sbjct 150954 GCGTAAAGCGTCTGTAGGT 150936 >seq32326 Length=27666 Score = 77.0 bits (84), Expect = 1e-11 Identities = 48/52 (92%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 263 ACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGA 314 |||||||||||||||||||||||||||| || | |||||||| ||||||||| Sbjct 6757 ACTCCTACGGGAGGCAGCAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGA 6808 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1496440857600