Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq32979 219 1e-54 seq2810 215 1e-53 seq28377 141 2e-31 seq33354 129 1e-27 seq33745 125 2e-26 seq34189 82.4 2e-13 seq1721 77.0 8e-12 >seq32979 Length=37524 Score = 219 bits (242), Expect = 1e-54 Identities = 250/336 (74%), Gaps = 0/336 (0%) Strand=Plus/Minus Query 13 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 72 |||| ||||||||| ||||||| |||| ||||||||| ||| || ||||||||||| Sbjct 23973 AAGCATCGGCTAACTCTGTGCCAGTAGCCACGGTAATACAGAGGATGCAAGCGTTATCCG 23914 Query 73 GAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGG 132 ||| | ||||||||| | | |||||||| || ||||||| | || ||| | | || Sbjct 23913 GAACGATTGGGCGTAATGCTTTTGTAGGTGGCTTTTTAAGTCCGTCGTCAAATCCCAAGG 23854 Query 133 CTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAAT 192 |||||||| || || | |||||| | ||| |||| | | ||||||| ||||| Sbjct 23853 CTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTGGAGTACGGTAGGGGCAGAAGGAAT 23794 Query 193 TCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTT 252 | || ||||||||||||| |||| || | | |||||||| |||||| | | Sbjct 23793 TTTCGGTAGAGCGGTGAAATGCATAGAGATCGGAAAGAACACCAACGGCGAAAACACTCT 23734 Query 253 GCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCC 312 ||||| | | ||||| ||| || ||||||| ||||||| || ||||||||||||| Sbjct 23733 GCTGGGCCGACACTGATACTAAGAGACGAAAGCTAGGGGAGCGAATGGGATTAGATACCC 23674 Query 313 TGGTAGTCCACGCCGTAAACGATGAATACTAGGTGT 348 | ||||||| |||||||||||||||||||||| || Sbjct 23673 TAGTAGTCCTAGCCGTAAACGATGAATACTAGGCGT 23638 >seq2810 Length=20389 Score = 215 bits (238), Expect = 1e-53 Identities = 255/341 (75%), Gaps = 11/341 (3%) Strand=Plus/Minus Query 2 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCT 61 ||| ||||| |||||||||||||||| |||||||||||||||||||| ||| |||||| Sbjct 10562 ACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCA 10503 Query 62 AGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTG 121 || ||| | |||||| ||||||||||||||| |||||| ||| | || | ||| Sbjct 10502 AGTGTTCTTCGGAATGACTGGGCGTAAAGGGCACGTAGGCGGTGAATCGGGTTGAAAGTG 10443 Query 122 AAAGGCTATGGCTCAACCCCG-GGACTGCTTTTGAAAC---TGCAGGGCTAGAGTGCAGG 177 |||| | | | || | | ||| |||| | ||||| | || || ||||| Sbjct 10442 AAAGTC---GCCAAAAACTGGCGGAATGCTCTCGAAACCAATTCA---CTTGAGTGAGAC 10389 Query 178 AGGGGCAAGTGGAATTCCTAGTGT-AGCGGTGAAATGCGTAGATATTAGGAGGAACACCA 236 || || ||||||||| | |||| || |||||||| | |||| | |||||| ||| Sbjct 10388 AGAGGAGAGTGGAATTTCGTGTGTTAGGGGTGAAATCCTGAGATCCGCGAAGGAACGCCA 10329 Query 237 GTGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAA 296 |||||||| ||| |||| || ||| |||||| ||||||| |||||||| | Sbjct 10328 AAAGCGAAGGCAGCTCTCTGGGTCCCTACCGACGCTGAGGTGCGAAAGCATGGGGAGCGA 10269 Query 297 ACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGA 337 |||||||||||||||||||||||||| |||||||||||||| Sbjct 10268 ACAGGATTAGATACCCTGGTAGTCCATGCCGTAAACGATGA 10228 Score = 75.2 bits (82), Expect = 3e-11 Identities = 47/51 (92%), Gaps = 0/51 (0%) Strand=Plus/Minus Query 2 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACG 52 ||| ||||| |||||||||||||||| |||||||||||||||||||| ||| Sbjct 19788 ACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACG 19738 >seq28377 Length=6645 Score = 141 bits (156), Expect = 2e-31 Identities = 172/232 (74%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 178 AGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAG 237 ||||||| |||||| | ||| |||||| ||||||||||| || | | |||||||| Sbjct 3504 AGGGGCAGAGGGAATTTCCGGTGGAGCGGTTAAATGCGTAGAGATCGGAAAGAACACCAA 3563 Query 238 TGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAA 297 |||||| || |||||||| | |||||||||||| ||||||| |||||| || Sbjct 3564 CGGCGAAAGCACTCTGCTGGACCGACACTGACACTGAGAGACGAAAGCTAAGGGAGCGAA 3623 Query 298 CAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCA 357 ||||||||||||| ||||||| ||||||||| ||| |||||||| | | | ||| | Sbjct 3624 TGGGATTAGATACCCCAGTAGTCCTAGCCGTAAACAATGGATACTAGGCG-CTGTGCGTA 3682 Query 358 T-AAGTGCTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | | | | |||| | ||| ||||| ||||| | || |||| |||||| Sbjct 3683 TCGACCCGTGCAGTGCTGTAGCTAACGCGTTAAGTTTCCCGCCTGAGGAGTA 3734 >seq33354 Length=58814 Score = 129 bits (142), Expect = 1e-27 Identities = 150/200 (75%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 210 AATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACTGTAACTGAC 269 |||||||||| || | | |||||||| |||||| || |||||| | | |||||| Sbjct 48195 AATGCGTAGAGATCGGAAAGAACACCAACGGCGAAAGCACTCTGCTGGGCCGACACTGAC 48136 Query 270 ACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTA 329 |||||| ||||||| ||||||| || ||||||||||||| ||||||| |||||| Sbjct 48135 ACTGAGAGACGAAAGCTAGGGGAGCGAATGGGATTAGATACCCCAGTAGTCCTAGCCGTA 48076 Query 330 AACGATGAATACTAGGTGTCGGGGCGCAT-AAGTGCTCCGGTGCCGCAGCAAACGCAATA 388 || |||| |||||||| || | ||| || || | | || ||||| ||||| || Sbjct 48075 AATGATGGATACTAGGCGT-TGTGCGTATCAACCCATGCAATGATGCAGCTAACGCGTTA 48017 Query 389 AGTATTCCACCTGGGGAGTA 408 ||||| || ||||||||||| Sbjct 48016 AGTATCCCGCCTGGGGAGTA 47997 >seq33745 Length=118278 Score = 125 bits (138), Expect = 2e-26 Identities = 123/159 (77%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 178 AGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAG 237 ||||||| |||||| | ||| |||||||||||||||||| || | | |||||||| Sbjct 3947 AGGGGCAGAGGGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAA 3888 Query 238 TGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAA 297 |||||| || ||||| | | |||||||||||| ||||||| ||||||| || Sbjct 3887 CGGCGAAAGCACTCTGCTGAGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCGAA 3828 Query 298 CAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATG 336 ||||||||||||| ||||||| ||||||||||||| Sbjct 3827 TGGGATTAGATACCCCAGTAGTCCTAGCCGTAAACGATG 3789 >seq34189 Length=425456 Score = 82.4 bits (90), Expect = 2e-13 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 24 AACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGG 83 |||| |||||||||||||||||||||| | | || ||||||||||||||| | |||| Sbjct 151013 AACTCTGTGCCAGCAGCCGCGGTAATACAGAAGATGCAAGCGTTATCCGGAATGATTGGG 150954 Query 84 CGTAAAGGGTGCGTAGGT 101 ||||||| || |||||| Sbjct 150953 CGTAAAGCGTCTGTAGGT 150936 >seq1721 Length=20302 Score = 77.0 bits (84), Expect = 8e-12 Identities = 55/62 (89%), Gaps = 1/62 (2%) Strand=Plus/Minus Query 2 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCT 61 ||| ||||| |||||||||||||||| |||||||||||||||||||| ||| ||| ||| Sbjct 20276 ACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACG-GGGGTGCT 20218 Query 62 AG 63 || Sbjct 20217 AG 20216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202268723200