Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq32501 118 2e-24 seq34155 89.7 9e-16 seq27302 77.0 6e-12 >seq32501 Length=29827 Score = 118 bits (130), Expect = 2e-24 Identities = 124/160 (78%), Gaps = 10/160 (6%) Strand=Plus/Plus Query 93 CGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGTCATTGCATGCTGAATACATAGGT 152 || ||||| |||||| ||| |||| ||| | | |||| ||||||| ||| || Sbjct 16142 CGGAGATTCCCGAATAGGGCAACC------TTTCGAAC--TGCA-GCTGAATCCATGGGC 16192 Query 153 ATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACC 211 | |||| || ||| ||||||||||||||||| ||||||| ||||||||||| ||| Sbjct 16193 AGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGTAGCTAGAGGAAAAGAAAGCAAAA 16252 Query 212 GAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGCCT 251 | ||||||| |||||||||||||||||||||| ||||| Sbjct 16253 GCGATTCCCGTAGTAGTGGCGAGCGAAATGGGAGCAGCCT 16292 >seq34155 Length=130207 Score = 89.7 bits (98), Expect = 9e-16 Identities = 164/236 (69%), Gaps = 11/236 (5%) Strand=Plus/Plus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||||||| ||| || || ||| ||||| ||||||| | | | ||| || | Sbjct 38040 GGTGGATGCCTAGGCACCTAGAGACGAGGAAGGGCGTAGTAATCGACAAAATGCTTCGAG 38099 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 |||| | ||| | | | |||||| ||||| |||||| || |||| |||| Sbjct 38100 GAGTT-GAAAATAAGCATAGATCCGAAGATTCCCGAATATGGCAACCT-----TTTGA-- 38151 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 | ||| || ||||| ||| || | |||| || || |||||| |||||||||| ||| Sbjct 38152 -ACTGC-TGTTGAATCCATGGGCAAGCAAGAGACAATCTGGCGAATTGAAACATCTTAGT 38209 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGA 244 || ||||||||||| ||| | ||||| ||||| || |||||||| ||| Sbjct 38210 AGACAGAGGAAAAGAAAGCAAAAGCGATTCTTGTAGTAGCAGCAAGCGAAATAGGA 38265 >seq27302 Length=20257 Score = 77.0 bits (84), Expect = 6e-12 Identities = 63/77 (82%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 169 GCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGT 228 |||||||||||||||| ||||||| ||||| |||||||||||||| || ||||| Sbjct 200 GCGAACTGAAACATCTTAGTAGCTAAAGGAAGGGAAATCAACCGAGACCCCGTTAGTAGC 259 Query 229 GGCGAGCGAAATGGGAT 245 ||||||||| | |||| Sbjct 260 GGCGAGCGAGAGCGGAT 276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 917689158400