Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq2810 116 8e-24 seq33632 98.7 2e-18 seq34055 96.9 7e-18 seq34035 80.6 6e-13 >seq2810 Length=20389 Score = 116 bits (128), Expect = 8e-24 Identities = 145/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 105 CCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCA 164 ||||| || |||||| | | ||||| || | || ||| |||||| |||| ||||| || Sbjct 19837 CCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCA 19896 Query 165 CTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCT 224 |||||||| ||||| ||||| || |||||||||||| ||| ||||| || | ||| Sbjct 19897 CTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAA 19956 Query 225 CAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAAC 284 ||| | ||| |||| | |||| ||| ||| ||||| || |||||||||| || Sbjct 19957 AAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCTGACCAACTACCTAATACTAC 20016 Query 285 GCATCCCCATCGTACACCG 303 ||| | |||| ||| || Sbjct 20017 GCAGGCTCATCAAACAGCG 20035 >seq33632 Length=88754 Score = 98.7 bits (108), Expect = 2e-18 Identities = 156/225 (69%), Gaps = 18/225 (8%) Strand=Plus/Plus Query 4 TGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGTGGA 63 ||||||||| |||||||||||||||||||| | || ||| || || Sbjct 21657 TGCTGGCACAGAGTTAGCCGATGCTTATTCCTCAGATACCGTCAT-----------TGC- 21704 Query 64 AGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTAC 123 || ||| | |||| ||||| || | ||| | ||||| ||| ||||| | Sbjct 21705 -----TTCTTCTCCGGGAAAAAAAGTTCACGACTCGTGGG-CCTTCTACCTCCACGCGGC 21758 Query 124 TTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAG 183 | ||| ||| || ||| |||||| || ||||| |||| ||||| |||||||||| Sbjct 21759 ATTGCTCCGTCAAGCTTTCGCCCATTGCGGAAAATTCCCCACTACTGCCACCCGTAGGAG 21818 Query 184 TTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGA 228 | ||| |||||||||||| ||| ||||| || | |||||||||| Sbjct 21819 TCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGA 21863 >seq34055 Length=92358 Score = 96.9 bits (106), Expect = 7e-18 Identities = 141/197 (72%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 |||||||||| || | |||| | ||||| ||| ||||| | | |||| || || Sbjct 8484 AAAAGAAGTTCACGACCCGTGGG-CCTTCGACCTCCACGCGGCATTGCTGCAA-AGGCTT 8541 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200 ||| |||||| || ||||| |||||||||||||| | ||||| ||| |||||||||| Sbjct 8542 TCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCATGGGAGTCTGGGCCGTGTCTCAA 8601 Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTT 260 | ||| ||||| || | ||||||| || | ||| ||| | | || ||| || || Sbjct 8602 TCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATT 8661 Query 261 ACCCCGCCTACTACCTA 277 || | || |||| ||| Sbjct 8662 GCCTCACCAACTAGCTA 8678 >seq34035 Length=91046 Score = 80.6 bits (88), Expect = 6e-13 Identities = 59/69 (86%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 133 TCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCG 192 |||| || ||| |||||| || |||| |||||||||||||||||||||| ||||||| Sbjct 50484 TCAGGCTTTCGCCCATTGCGGAAAATTCTCCACTGCTGCCTCCCGTAGGAGTCTGGACCG 50543 Query 193 TGTCTCAGT 201 ||||||||| Sbjct 50544 TGTCTCAGT 50552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1067972748800