Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq4747 95.1 2e-17 seq22256 86.0 1e-14 seq2273 78.8 2e-12 seq17243 77.0 5e-12 seq7210 75.2 2e-11 >seq4747 Length=2643 Score = 95.1 bits (104), Expect = 2e-17 Identities = 91/114 (80%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | ||||||| | ||| || ||| || ||| Sbjct 2616 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCTAGT 2559 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||| | | ||||||||| |||||||||||||||||||||||| Sbjct 2558 GGCGCGAAGCTACCGTGCGTTGGATTATGACTGAACGCCTCTAAGTCAGAATCC 2505 >seq22256 Length=3151 Score = 86.0 bits (94), Expect = 1e-14 Identities = 84/106 (79%), Gaps = 2/106 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || |||| | ||||||| | ||| || ||| || |||| Sbjct 3048 GTACGAGAGGAACCGTTGA-TTCACAC-AATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 3105 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGT 106 | |||||||||||| | | ||||||||| |||||||||||||||| Sbjct 3106 GGCGCGAAGCTACCGTGCGTTGGATTATGACTGAACGCCTCTAAGT 3151 >seq2273 Length=10353 Score = 78.8 bits (86), Expect = 2e-12 Identities = 54/61 (89%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 54 AGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 || ||||| |||||||||||| | | ||||||||| ||||||||||||||||||||||| Sbjct 10336 AGCCAGTGGCGCGAAGCTACCGTGCGTTGGATTATGACTGAACGCCTCTAAGTCAGAATC 10277 Query 114 C 114 | Sbjct 10276 C 10276 >seq17243 Length=2855 Score = 77.0 bits (84), Expect = 5e-12 Identities = 60/72 (83%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 54 AGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 || ||||| |||||||||||| | | ||||||||| ||||||||| ||||||||||||| Sbjct 216 AGCCAGTGGCGCGAAGCTACCGTGCGTTGGATTATGACTGAACGCCACTAAGTCAGAATC 157 Query 114 CATGCCAGAACG 125 | || ||| || Sbjct 156 CGGGCTAGACCG 145 >seq7210 Length=2668 Score = 75.2 bits (82), Expect = 2e-11 Identities = 75/96 (78%), Gaps = 1/96 (1%) Strand=Plus/Plus Query 30 ATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATG 89 |||||| | ||| || ||| || ||||| |||||||||||| | | ||||||||| Sbjct 2509 ATTGGTCATCGCGCTTGGTTGAAAAGCCAGTGGCGCGAAGCTACCGTGCGTTGGATTATG 2568 Query 90 GCTGAACGCCTCTAAGTCAGAATCCATGCCAGAACG 125 |||||||||||||||||| ||||| || ||| || Sbjct 2569 ACTGAACGCCTCTAAGTCA-AATCCGGGCTAGACCG 2603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 818585753600