Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq33599 145 6e-30 seq33488 102 6e-17 >seq33599 Length=161954 Score = 145 bits (160), Expect = 6e-30 Identities = 304/450 (68%), Gaps = 11/450 (2%) Strand=Plus/Plus Query 61192 CATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAAT 61251 || || ||||| || || | || || |||||||| || ||||| ||||| |||||| Sbjct 157318 CACTTTATTAAGCACGTACTTGCCTTTTTTGCCGCCTCCGACGGCATCGTTTTGGAGAAT 157377 Query 61252 TTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTC 61311 | | ||| ||| | ||||||| || | ||||||||||| || || || ||| Sbjct 157378 CTTGCCGGACGGTTCATGAAGGAGGTCCAGATTGCGGAGGCGCGTGCGTTTTATGGATTC 157437 Query 61312 CAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATC 61371 ||||| ||||| |||||| ||||||| |||||||||||| |||| | || || |||||| Sbjct 157438 CAGATCGCCATCGAGAATATCCACTCTGAGATGTACAGTCTTCTGTTGGAGACTTACATC 157497 Query 61372 AGGGAGCGGGCGGAACGTGAACGA----TTGTTCAATGCCATCGAGACGATACCGGCGGT 61427 | ||| | ||| | ||| || |||||| | || || || || | || || Sbjct 157498 AAGGA---TTCTGAA-GAGAAGGATAGGTTGTTCCACGCGATTGATACTGTGCCCTGTGT 157553 Query 61428 GAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGA 61487 | || ||| || | ||||| || |||||| | ||| |||| | ||| Sbjct 157554 GGAGAAGAAGGCTAAGTGGGCTCTCCGTTGGAT---TGATGGCTCGGAATCATTCGCTGA 157610 Query 61488 ACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAAT 61547 || ||| |||| || || || ||||| | || ||| ||| ||| || || Sbjct 157611 GCGTTTGTTGGCCTTCGCTTGTGTTGAGGGGATCTTCTTCTCTGGGAGTTTTTGTGCTAT 157670 Query 61548 CTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATC 61607 || ||| |||| || || || | ||||| || || ||||| ||||||||||| || Sbjct 157671 ATTCTGGCTGAAAAAGCGCGGTTTGATGCCGGGGTTGTCCTTCTCGAATGAGTTGATCTC 157730 Query 61608 ACGCGACGAGGGCATGCATTGTGATTTTGC 61637 || || |||||| |||| || |||||||| Sbjct 157731 GCGAGATGAGGGCTTGCACTGCGATTTTGC 157760 >seq33488 Length=63435 Score = 102 bits (112), Expect = 6e-17 Identities = 183/270 (68%), Gaps = 17/270 (6%) Strand=Plus/Minus Query 61084 GATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGAT 61143 || |||||| |||||||| || || || || || |||||||| | || || || ||| Sbjct 35690 GAGATTTGGGAGATGTACAAGAAAGCCGAGGCCTCTTTCTGGACTGCTGAAGAAGTGGAT 35631 Query 61144 TTGTCCAAAGACATGAATGACTGGGAGCGTTTATCGAGCGGTGAACAACATTTCATTAAA 61203 | || | ||| | ||| ||||||| | | || || |||| |||||||| Sbjct 35630 CTCTCTCAGGACCTCAATCACTGGGATACCCTCACTCCCGACGAGAAACACTTCATTAAG 35571 Query 61204 CATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGT 61263 || ||| | || ||||||||||| || ||||| || || ||||| ||| Sbjct 35570 CACGTGCTTGCTTTCTTTGCCGCCTCTGACGGCATTGTTTTAGAGAACCTAT-------- 35519 Query 61264 TTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATG 61323 | | ||||| || || || ||||| ||| |||||||||||||| || ||||| Sbjct 35518 -----GAAAGAGGTCCAGGTCTCCGAGGCTCGTGCGTTCTACGGCTTCCAAATCGCCATC 35464 Query 61324 GAGAATGTCCAC----TCGGAGATGTACAG 61349 ||||| ||||| || ||||||||||| Sbjct 35463 GAGAACATCCACTCCATCCGAGATGTACAG 35434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397192969136000