Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_014744.1 Length=1383 Score E Sequences producing significant alignments: (Bits) Value seq29604 75.2 1e-10 >seq29604 Length=41804 Score = 75.2 bits (82), Expect = 1e-10 Identities = 122/172 (71%), Gaps = 8/172 (5%) Strand=Plus/Minus Query 1034 GAATTGCATAAGCACATGGAGATGAGGTTCGCCATTCTCGTGGAGTTCTCTGCAAATTTT 1093 ||| || | ||| | || | ||| ||||| || || | ||| ||||||||||| | | | Sbjct 21159 GAACTGGAGAAGTATGTGCAAATGTGGTTCCCCGTTATTGTGTAGTTCTCTGCACACTCT 21100 Query 1094 AATATATTTTTTATTGGTTGGGGTATTT---AATT-TGAGTATTTGTTCGAGTGCCTCTT 1149 || ||||| ||| || || || || |||| |||| || | || | | | Sbjct 21099 CATGTATTTGAGATTTGTACGG-TAGTTGAGAATTATGAGA---TGATGAAGAACATAAT 21044 Query 1150 CTTTGGATAGAGAGCATTTTGGGAAAGTGAGGAAATAATTTTTTGCATTTAT 1201 |||| || ||||| ||| ||||||||||||||||||||||||| |||||| Sbjct 21043 CTTTTGAGAGAGAACATCTTGGGAAAGTGAGGAAATAATTTTTGCTATTTAT 20992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4313249971600