Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_031903.1 Length=172345 Score E Sequences producing significant alignments: (Bits) Value seq34317 111 2e-19 seq30018 87.8 2e-12 seq34415 86.0 7e-12 seq34405 86.0 7e-12 >seq34317 Length=297777 Score = 111 bits (122), Expect = 2e-19 Identities = 128/171 (75%), Gaps = 6/171 (4%) Strand=Plus/Plus Query 160504 AGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCCTTTAACAACTCACGCTC 160563 || |||||| || || |||| ||||||||||||||||| || |||||||| || || Sbjct 200225 AGAACATGGTTATTTTGGTCAATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTC 200284 Query 160564 TCTGCACTTCTTCCTCGCTGCTTGGCCTGT-----TGTTGGAATCTGGTTCACTGCCCTT 160618 | ||||||||| | | |||||||||||| || || ||||||||||| || | Sbjct 200285 GTTACACTTCTTCTTAGTTGCTTGGCCTGTAGTAGGGTAGGTATCTGGTTCAC-GCTTTA 200343 Query 160619 GGTGTTTCTACCATGGCATTCAATCTCAATGGTTTCAACTTCAACCAGTCC 160669 ||| | | ||||||||||| || || |||||||| |||||||| ||| Sbjct 200344 GGTATCAGCATTATGGCATTCAACCTAAACGGTTTCAATTTCAACCAATCC 200394 >seq30018 Length=17342 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 160289 ACTTTTAACTATATGCTTGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCAC 160348 ||||| || | ||| |||||| ||| || || ||||| | |||| ||| || || || Sbjct 7190 ACTTTCAATTTCATGATTGTATCCCAGGCCGAGCACAACACTCTTACGCACCCATTTCAT 7249 Query 160349 ATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTGTTCTCTGCTATGCATGGATC 160404 ||| | ||||| ||||| ||||||| ||| ||||| || | |||||||||||| || Sbjct 7250 ATGTTAGGTGTAGCTGGTGTATTCGATGGCTCTCTATTATGTGCTATGCATGGTTC 7305 >seq34415 Length=341782 Score = 86.0 bits (94), Expect = 7e-12 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 160973 TCCTTGACGCTGCTGATGAAGCAGGTGTTGACGGACCCTACTCCTGTCGTGCTGGTGCTT 161032 |||| ||| |||| || | ||||| | ||| ||||| || || | |||||||| | Sbjct 213933 TCCTGGACTCTGCAGAGGCGGCAGGGATGGACCTGCCCTATTCTTGCAGGGCTGGTGCAT 213992 Query 161033 GCTCTACTTGTGCTGGTAAGATTGAGAGTGGTACTGTAGATCAATCTGATCAATCTTTCC 161092 ||| ||||||||||| ||||| | ||| |||| |||||||||||| ||| || | Sbjct 213993 GCTGCACTTGTGCTGGGAAGATCGCATCCGGTTCTGTTGATCAATCTGATGGATCGTTTC 214052 Query 161093 TGGATGATGATCAACTTGAATCAGGATTTGTCCTGACCTGCGTTGCTTATCCCACTTCTG 161152 | ||||| | ||| | | | |||| | | ||||| || || |||| || || || | Sbjct 214053 TTGATGACAACCAAATGGGAGAGGGATATTTGCTGACTTGTGTCTCTTACCCGACCTCAG 214112 Query 161153 AT 161154 || Sbjct 214113 AT 214114 >seq34405 Length=290930 Score = 86.0 bits (94), Expect = 7e-12 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 161008 CCCTACTCCTGTCGTGCTGGTGCTTGCTCTACTTGTGCTGGTAAGATTGAGAGTGGTACT 161067 || ||||| || | || || || |||||||| || || || ||||| |||| || || Sbjct 17915 CCATACTCTTGCAGGGCCGGGGCATGCTCTACCTGCGCGGGGAAGATCGAGACGGGCTCT 17974 Query 161068 GTAGATCAATCTGATCAATCTTTCCTGGATGATGATCAACTTGAATCAGGATTTGTCCTG 161127 || |||||||||||| ||||| || ||||| | ||| | | | |||| |||| || Sbjct 17975 GTGGATCAATCTGATGGGTCTTTTCTCGATGACGGCCAAGTGGGAGAGGGATATGTCTTG 18034 Query 161128 ACCTGCGTTGCTTATCCCACTTCTGAT 161154 || || ||| |||| || ||||| ||| Sbjct 18035 ACTTGTGTTTCTTACCCAACTTCAGAT 18061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 550842543720000