Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_031906.1 Length=198190 Score E Sequences producing significant alignments: (Bits) Value seq34317 140 4e-28 seq33222 113 6e-20 seq30018 82.4 1e-10 >seq34317 Length=297777 Score = 140 bits (154), Expect = 4e-28 Identities = 145/189 (77%), Gaps = 6/189 (3%) Strand=Plus/Plus Query 189556 CATGGATATTTCGGTCGTCTTATCTTCCAATATGCATCGTTCAACAACTCCCGTTCACTT 189615 ||||| ||||| |||| | |||||||||||||| ||||||||||| ||||| | Sbjct 200229 CATGGTTATTTTGGTCAATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCGTTA 200288 Query 189616 CACTTCTTCCTCGCTGCCTGGCCAGTCGTGGG-----TATCTGGTTTACCGCCCTCGGCG 189670 ||||||||| | | ||| ||||| || || || ||||||||| || || | || Sbjct 200289 CACTTCTTCTTAGTTGCTTGGCCTGTAGTAGGGTAGGTATCTGGTTCAC-GCTTTAGGTA 200347 Query 189671 TCAGCACCATGGCATTCAACCTCAATGGGTTCAACTTCAATCAATCCATTCTTGATGGTC 189730 |||||| |||||||||||||| || || ||||| ||||| |||||| | ||||| ||| Sbjct 200348 TCAGCATTATGGCATTCAACCTAAACGGTTTCAATTTCAACCAATCCGTAGTTGATAGTC 200407 Query 189731 AAGGTCGTG 189739 ||||||||| Sbjct 200408 AAGGTCGTG 200416 >seq33222 Length=111615 Score = 113 bits (124), Expect = 6e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 190461 TTCGGTGTGGCAGCGATCTTCCGCTTCCTCCTCTTCTTGCAGGGCTTCCATAACTGGACG 190520 || ||||| ||||| || || || ||| || |||| || || || || ||||| ||||| Sbjct 60571 TTTGGTGTAGCAGCTATATTTCGATTCATCATCTTTTTTCAAGGGTTTCATAATTGGACA 60512 Query 190521 CTGAACCCCTTCCACATGATGGGTGTTGCAGGTATCCTGGGAGGAGCACTACTGTCAGCA 190580 ||||||| || || |||||||| ||||| ||| | |||| | | | || | | Sbjct 60511 TTGAACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGTGCTCCCTTGCTATGCACT 60452 Query 190581 ATCCATGGTGTGACTGTAGAGAATACTTTGTATGAAGATGGTGAACAAGCAAACACGTTT 190640 || ||||||| ||| |||| |||||||| | |||||||||||| ||||| || || Sbjct 60451 ATTCATGGTGCTACTATAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTC 60392 Query 190641 AAAGCATTCGACTCTACACAAGAGGAAGAGACCTATTCGATGGTCAC 190687 || || || | || ||| ||||| || ||||| ||||| || Sbjct 60391 CGCGCTTTTAACCCAACTCAATCTGAAGAAACTTATTCAATGGTTAC 60345 >seq30018 Length=17342 Score = 82.4 bits (90), Expect = 1e-10 Identities = 89/118 (75%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 189335 GAACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCC 189394 |||| ||||| | |||| |||| | ||| || |||||||||| || | |||||| || | Sbjct 7188 GAACTTTCAATTTCATGATTGTATCCCAGGCCGAGCACAACACTCTTACGCACCCATTTC 7247 Query 189395 ACATGCTGGGAGTCGCAGGTGTCTTCGGTGGTTCACTGTTCTCCGCAATGCATGGTTC 189452 | ||| | || || || ||||| |||| ||| || || || | || ||||||||||| Sbjct 7248 ATATGTTAGGTGTAGCTGGTGTATTCGATGGCTCTCTATTATGTGCTATGCATGGTTC 7305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633466527600000