Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_031922.1 Length=174830 Score E Sequences producing significant alignments: (Bits) Value seq34118 170 2e-37 seq34317 140 4e-28 seq33222 140 4e-28 seq30018 102 9e-17 seq33933 93.3 5e-14 >seq34118 Length=323312 Score = 170 bits (188), Expect = 2e-37 Identities = 219/302 (73%), Gaps = 0/302 (0%) Strand=Plus/Minus Query 164310 GTTTTCCTTATGTACCCTCTCGGGCAATCTAGTTGGTTCTTTGCCCCCTCGTTTGGGGTC 164369 || ||| | || || || || || || ||| ||||||||||||| || ||||| || Sbjct 7059 GTATTCTTGATTTATCCGCTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTA 7000 Query 164370 GCGGCGATCTTCAGATTCCTCTTGTTCCTCCAAGGTTTCCATAACTGGACACTCAACCCC 164429 || | || || ||| | || | || | ||||| || ||||| |||||| | |||| Sbjct 6999 GCAACTATATTTCGATCCATCCTCTTTTTTCAAGGGTTTCATAATTGGACATTGTACCCA 6940 Query 164430 TTCCATATGATGGGTGTTGCAGGCATCCTTGGTGGTGCTCTTCTCTGTGCTATTCATGGT 164489 || ||||||||||| |||| || | | || ||| | || || |||||||||||| Sbjct 6939 TTTCATATGATGGGAGTTGTCGGTGTATTGGGCACTGCCTTGCTATGCGCTATTCATGGT 6880 Query 164490 GCTACCGTAGAGAATACTTTGTTTGAAGATGGTGAACAATCAAATACTTTCAAGGCATTC 164549 ||||||||||| |||||||| |||||||| ||||| ||||||| ||| || || Sbjct 6879 GCTACCGTAGAAAATACTTTATTTGAAGACGGTGATGGTGCAAATACATTCTGTGCTTTT 6820 Query 164550 GAGCCTACTCAAGAGGAAGAGACTTACTCGATGGTCACTGCCAACCGCTTCTGGTCTCAG 164609 |||| |||||| ||||| ||||| || ||| | ||||| |||| ||| ||||| || Sbjct 6819 AAGCCAACTCAATCTGAAGAAACTTATTCAATGATTACTGCTAACCACTTTTGGTCCCAA 6760 Query 164610 AT 164611 || Sbjct 6759 AT 6758 >seq34317 Length=297777 Score = 140 bits (154), Expect = 4e-28 Identities = 142/184 (77%), Gaps = 6/184 (3%) Strand=Plus/Plus Query 161277 CATGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCCCGTTCGTTG 161336 |||||||| || |||| ||||||||||||| ||| ||||||||||| |||||||| Sbjct 200229 CATGGTTATTTTGGTCAATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCGTTA 200288 Query 161337 CACTTCTTCCTCGCAGCATGGCCTGT-----TGTCGGTATCTGGTTCACTGCACTTGGTG 161391 ||||||||| | | || |||||||| || |||||||||||||| || | ||| Sbjct 200289 CACTTCTTCTTAGTTGCTTGGCCTGTAGTAGGGTAGGTATCTGGTTCAC-GCTTTAGGTA 200347 Query 161392 TCTCCACCATGGCATTCAACCTGAACGGATTCAACTTCAACCAGTCCATCATGGATGGTC 161451 || || |||||||||||||| ||||| ||||| |||||||| ||| | | ||| ||| Sbjct 200348 TCAGCATTATGGCATTCAACCTAAACGGTTTCAATTTCAACCAATCCGTAGTTGATAGTC 200407 Query 161452 AGGG 161455 | || Sbjct 200408 AAGG 200411 >seq33222 Length=111615 Score = 140 bits (154), Expect = 4e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 164361 TTTGGGGTCGCGGCGATCTTCAGATTCCTCTTGTTCCTCCAAGGTTTCCATAACTGGACA 164420 ||||| || || || || || ||||| || | || | ||||| || ||||| |||||| Sbjct 60571 TTTGGTGTAGCAGCTATATTTCGATTCATCATCTTTTTTCAAGGGTTTCATAATTGGACA 60512 Query 164421 CTCAACCCCTTCCATATGATGGGTGTTGCAGGCATCCTTGGTGGTGCTCTTCTCTGTGCT 164480 | ||||| || ||||||||||| ||||| || | | |||| | | | || || || Sbjct 60511 TTGAACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGTGCTCCCTTGCTATGCACT 60452 Query 164481 ATTCATGGTGCTACCGTAGAGAATACTTTGTTTGAAGATGGTGAACAATCAAATACTTTC 164540 |||||||||||||| |||| |||||||| |||||||||||||| ||||||| ||| Sbjct 60451 ATTCATGGTGCTACTATAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTC 60392 Query 164541 AAGGCATTCGAGCCTACTCAAGAGGAAGAGACTTACTCGATGGTCAC 164587 || || | || |||||| ||||| ||||| || ||||| || Sbjct 60391 CGCGCTTTTAACCCAACTCAATCTGAAGAAACTTATTCAATGGTTAC 60345 >seq30018 Length=17342 Score = 102 bits (112), Expect = 9e-17 Identities = 92/116 (79%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 161058 ACCTTCAACTTCATGCTTGTCTTCCAGGCAGAACACAACATCCTGATGCACCCCTTCCAC 161117 || ||||| |||||| |||| | |||||| || ||||||| || | |||||| || || Sbjct 7190 ACTTTCAATTTCATGATTGTATCCCAGGCCGAGCACAACACTCTTACGCACCCATTTCAT 7249 Query 161118 ATGTTGGGTGTTGCTGGTGTCTTCGGTGGTTCTCTGTTCTCCGCAATGCATGGTTC 161173 ||||| ||||| |||||||| |||| ||| ||||| || | || ||||||||||| Sbjct 7250 ATGTTAGGTGTAGCTGGTGTATTCGATGGCTCTCTATTATGTGCTATGCATGGTTC 7305 >seq33933 Length=146745 Score = 93.3 bits (102), Expect = 5e-14 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 160728 GGTTCACTGATGTATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCA 160787 || || ||| | || |||||||| || ||||||||||| ||| |||| |||| || Sbjct 32859 GGATCTCTGCTTTACGGAAACAATATTATCTCTGGTGCTGTTATTCCGACTTCTGCAGCT 32918 Query 160788 ATTGGTCTTCACTTCTACCCCATTTGGGAAGCTGCATCTCTTGATGAATGG 160838 || ||| | ||||| ||||| ||||||||||| ||||| ||||||||||| Sbjct 32919 ATAGGTTTACACTTTTACCCAATTTGGGAAGCGGCATCCGTTGATGAATGG 32969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 558786850160000