Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_031927.1 Length=216121 Score E Sequences producing significant alignments: (Bits) Value seq34342 89.7 7e-13 >seq34342 Length=184756 Score = 89.7 bits (98), Expect = 7e-13 Identities = 154/224 (69%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 162607 GCCTCTAGCGGTATTCTATTCAATCACGAAAGCTCACGCAGAGGAGAGACGTTCGTCACA 162666 |||| | ||| || || |||||||||||| | | | | || |||| ||||| || Sbjct 103291 GCCTGCAACGGAATCCTCTTCAATCACGAATCCCCGAGACGCGGGGAGAATTTCGTGACC 103350 Query 162667 CGCAAGATCGTCCGAGCCTTGTCCCGAATTAGTGTGGGACTCCAAAGTGATCTACAACTT 162726 || ||||| ||| || | || || | | || |||||||| | || || Sbjct 103351 CGGAAGATAACCCGGGCGGTAGGGCGGATCAAAATCGGGCTCCAAAGCAAGCTCTTCCTG 103410 Query 162727 GGAAACCTCAATGCCCGACGTGACTGGGGACACGCCAAAGACTACGTAGAGGCTATGTGG 162786 || ||| | | ||| |||||||||||| ||| |||||||| || || |||||| Sbjct 103411 GGGAACTTACAGGCCTCACGTGACTGGGGCTTCGCAGGGGACTACGTGGAAGCAATGTGG 103470 Query 162787 TTGATGCTTCAGCAAGAGAAGCCAGATGATTATGTGATCGCAAC 162830 ||||||||||||| |||||||| || ||||| ||| | || || Sbjct 103471 ATGATGCTTCAGCAGGAGAAGCCGGACGATTACGTGGTGGCCAC 103514 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 690790213224000