Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq97 407 2e-111 seq54 343 2e-92 seq1930 277 3e-72 seq1868 242 6e-62 >seq97 Length=1410092 Score = 407 bits (450), Expect = 2e-111 Identities = 246/256 (96%), Gaps = 3/256 (1%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 400615 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 400558 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 400557 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 400498 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 400497 CCCGGGCCTGTCGGCCAAGGCTATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 400438 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| Sbjct 400437 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAGAAG 400378 Query 241 GCCAT-CTCCCTCGAA 255 ||||| |||||| || Sbjct 400377 GCCATAGTCCCTCTAA 400362 >seq54 Length=3626826 Score = 343 bits (380), Expect = 2e-92 Identities = 232/256 (91%), Gaps = 4/256 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||| || || | |||| || |||||||||| |||||||||||||| | Sbjct 1505116 GTACAAAGGGCAGGAACATAATGAACGTGAC--TGATGACTCGTGCTTACTAGGAATT-C 1505060 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1505059 CTTGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 1505000 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||| || |||||||||| ||||||| |||||||||||||||||||| ||||||||| Sbjct 1504999 CCCGGGTCTTTCGGCCAAGGCTATAGACTAGTTGAATACATCAGTGTAGCACGCGTGCGG 1504940 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||| Sbjct 1504939 CCCAGAACATCTAAGGGCATCACAAACCTGTTATTGCCTCAAACTTCCTTGGCCTAGAAG 1504880 Query 241 GCCAT-CTCCCTCGAA 255 ||||| |||||| || Sbjct 1504879 GCCATAGTCCCTCTAA 1504864 >seq1930 Length=7350 Score = 277 bits (306), Expect = 3e-72 Identities = 201/229 (88%), Gaps = 3/229 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||| ||| |||||| |||||||||||| ||| | Sbjct 3180 GTACAAAGGGCAGGGACGTAATCAACGCATGCT-GATGACATGCGCTTACTAGGCATT-C 3237 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 ||||||||||| ||| |||||||||| |||||||||| ||||| | ||| | |||||| Sbjct 3238 CTCGTTGAAGAGCAATAATTGCAATGCTCTATCCCCAGCACGACAGAGTTTAACAAGATT 3297 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| ||||| ||||||||||||| |||||||| | ||||||||||||||||||| Sbjct 3298 ACCCAGACCTTCCGGCCAAGGTGATGAACTCGTTGGCTCTGTCAGTGTAGCGCGCGTGCG 3357 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3358 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 3406 >seq1868 Length=2880 Score = 242 bits (268), Expect = 6e-62 Identities = 195/229 (85%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||||| ||| |||||| ||||||||||||| ||| | Sbjct 2432 GTACAAAGGGCAGGGACGTAATCAACGCGTGCT-GATGACACGCGCTTACTAGGCATT-C 2375 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 ||||||||||| ||| |||||||||| |||||||||| ||||| | | ||| | |||||| Sbjct 2374 CTCGTTGAAGAGCAATAATTGCAATGCTCTATCCCCAGCACGACGGAGTTTAACAAGATT 2315 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| | ||| ||||| |||| | | ||||| || | | |||||||||||||||||| Sbjct 2314 ACCCAGGCCTTTCGGCAAAGGAGG-ATACTCGCTGGCTCCGTCAGTGTAGCGCGCGTGCT 2256 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 |||| | |||||||||||||||||||||||||| ||||||| |||||| Sbjct 2255 GCCCGGGACATCTAAGGGCATCACAGACCTGTTTTTGCCTC--ACTTCC 2209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751956115160