Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq1930 489 3e-136 seq1868 309 6e-82 seq97 239 8e-61 seq54 111 3e-22 >seq1930 Length=7350 Score = 489 bits (542), Expect = 3e-136 Identities = 300/315 (95%), Gaps = 3/315 (1%) Strand=Plus/Minus Query 5 TGGTCCGGCCGGG-CCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGG 63 ||||||||||||| |||||||| ||||||| ||||||||||||||||||| ||| ||||| Sbjct 4141 TGGTCCGGCCGGGTCCTTTCCT-CTGGGGAGCCGCATGCCCTTCACTGGGCGTGTCGGGG 4083 Query 64 AGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACA 123 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4082 AACCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACA 4023 Query 124 TTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCG 183 ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| | Sbjct 4022 TTAGCATGGAATAATAGAATAGGACA-GAGGTTCTATTTTGTTGGTTTCTAGGACCGCTG 3964 Query 184 TAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTG 243 |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| Sbjct 3963 TAATGATTAATAGGGATAGTCGGGGGCGTCCGTATTCAATTGTCAGAGGTGAAATTCTTG 3904 Query 244 GATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTG 303 |||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||||||| Sbjct 3903 GATTTATTGAAGACGAACTACTGCGAAAGCATTCGCCAAGGATGTTTTCATTAATCAGTG 3844 Query 304 AACGAAAGTTAGGGG 318 ||||||||||||||| Sbjct 3843 AACGAAAGTTAGGGG 3829 >seq1868 Length=2880 Score = 309 bits (342), Expect = 6e-82 Identities = 213/238 (89%), Gaps = 2/238 (1%) Strand=Plus/Plus Query 81 TGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATGGAATAATAG 140 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1554 TGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGGATACATTAGCATGGAATAATAG 1613 Query 141 AATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGAT 200 |||||| || || |||||||||||||||||||| |||| |||||||||||||| Sbjct 1614 AATAGGGCGGGCCCC-CTATTTTGTTGGTTTCTAGGGGAGCCGCAATGATTAATAGGGCC 1672 Query 201 AGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAA 260 ||| |||| |||||||||||| |||||||||||||||||||||| |||||||||||| Sbjct 1673 GGTCAGGGGCATCAGTATTCAATCGTCAGAGGTGAAATTCTTGGATCGATTGAAGACTAA 1732 Query 261 CTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 ||||||||||||| || ||| ||||||||||||||||||| |||||||||||||||| Sbjct 1733 CTACTGCGAAAGCATTTGCCAGGGATGTTTTCATTAATCAG-GAACGAAAGTTAGGGG 1789 >seq97 Length=1410092 Score = 239 bits (264), Expect = 8e-61 Identities = 204/248 (82%), Gaps = 3/248 (1%) Strand=Plus/Plus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130 || |||||||||| ||||||||||| |||||||| |||| |||| | |||||||||||| Sbjct 399722 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 399781 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 || |||| | |||||| | |||| ||||| |||||| | ||| || |||||||| Sbjct 399782 GGGATAACATCATAGGATTT-CGGTCCTATTGTGTTGGCCTTCGGGATCGGAGTAATGAT 399840 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 ||| ||||| ||||||||| | ||||| || |||||||||||||||||||||||||| Sbjct 399841 TAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 399900 Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310 ||||| ||| ||||||||||| || |||||||||||||||||||||| |||||||| Sbjct 399901 GAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAA 399959 Query 311 GTTAGGGG 318 ||| |||| Sbjct 399960 GTTGGGGG 399967 >seq54 Length=3626826 Score = 111 bits (122), Expect = 3e-22 Identities = 101/125 (81%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 194 TAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGA 253 |||||| ||| ||||| | ||||| || ||||||||||||||||||| |||||| | Sbjct 1504056 TAGGGACAGTTGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGAATTTATGAA 1504115 Query 254 AGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTT 313 |||| ||| | |||||||| || ||||||||||||| |||||||| ||| ||||||| Sbjct 1504116 AGACGAACAATTGCGAAAGTATTTGCCAAGGATGTTTTTATTAATCA-AGAATGAAAGTT 1504174 Query 314 -AGGG 317 |||| Sbjct 1504175 GAGGG 1504179 Score = 87.8 bits (96), Expect = 3e-15 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 194 TAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGA 253 |||||| |||||||||| | ||||| || ||||||||||||||| |||||||||| | Sbjct 1503966 TAGGGACAGTCGGGGGTATTCGTATTTCATAGTCAGAGGTGAAATTTTTGGATTTATGAA 1504025 Query 254 AGACTAACTACTGCGAAA 271 |||| ||| ||||||||| Sbjct 1504026 AGACGAACAACTGCGAAA 1504043 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915144868352