Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq1930 834 0.0 seq1851 713 0.0 seq214 152 2e-34 seq167 87.8 7e-15 >seq1930 Length=7350 Score = 834 bits (924), Expect = 0.0 Identities = 582/656 (89%), Gaps = 8/656 (1%) Strand=Plus/Minus Query 28 AGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTT 87 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2310 AGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTT 2251 Query 88 CTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA 147 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2250 CTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA 2191 Query 148 AGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAAC 207 ||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||| Sbjct 2190 AGCACTTTGGAAAGAGAGTCAAAAAGCGCGTGAAATTGTTGAAAGGGAAGCGCCCGCAAC 2131 Query 208 CAGACTTGCCCGCAGTTGCTCAACCGGCCCCTCGGCCGGTGCACTCTTCTGCGGTCAGGC 267 ||||||| | || | || || | || | | ||||| |||| | || || |||| Sbjct 2130 CAGACTTTGCGGC-GGTGTTCGGCTGGTCTTCTGACCGGTTTACTC-GCCGCCGTGAGGC 2073 Query 268 CAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTTCGGGGGGTGT 327 || |||| || || | | |||| ||| || ||||||| || |||||||||| |||| Sbjct 2072 CATCATCGTCTGGGACCGCTGGAT-AAGACCTGAGGAATGTAGCTCCCTTCGGGGTGTGT 2014 Query 328 TATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGCGCTCCGGCTAGGATGCT 387 ||||||| |||| |||| || || || | |||||||||||| |||| |||||| | Sbjct 2013 TATAGCCTCTGGTG--ATGCAGCGCGTCTCGGGCGAGGTCCGCGCTTCGGCAAGGATGAT 1956 Query 388 GGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGC 447 |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1955 GGCGTAATGGTTGTCGGCGGCCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGC 1896 Query 448 GAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGA 507 ||||||| ||||||||||||| | |||||||||||||||||||||||||||||| | Sbjct 1895 GAGTGTTCGGGTGTCAAACCCCTACGCGTAATGAAAGTGAACGGAGGTGGGAAC---TTT 1839 Query 508 GGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTT 567 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1838 TTGTGCACCATCGACCGATCCTGATGTCCTCGGATGGATTTGAGTAAGAGCATAGCTGTT 1779 Query 568 GGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGG 627 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1778 GGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGG 1719 Query 628 AGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1718 AGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 1663 >seq1851 Length=5936 Score = 713 bits (790), Expect = 0.0 Identities = 560/665 (84%), Gaps = 11/665 (2%) Strand=Plus/Minus Query 19 GCCGTGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGT 78 ||| |||| |||||| ||||||||||||||||||||||||||||||||||| ||| ||| Sbjct 5460 GCCATGTGTAGCTCCCTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAGCGGGTGGT 5401 Query 79 AAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGA 138 ||||| | |||||||||||||| |||| ||||||||||||||||||||||||||||||| Sbjct 5400 AAATTCCATCTAAAGCTAAATACCGGCCGGAGACCGATAGCGCACAAGTAGAGTGATCGA 5341 Query 139 AAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGC 198 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 5340 AAGATGAAAAGCACTTTGAAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGC 5281 Query 199 GCTTGCAACCAGACTTGCCCGCAGTTGCTCAACCGGCCCCTCGGCCGGTGCACTCTTCTG 258 ||| || ||||||| | | || | | ||| ||| || | || | || | | | Sbjct 5280 GCTCGCGGCCAGACTCG-CGGCGGGGGGTCAGGCGG--CCGTGTCCCTCCCCCTGTCCGG 5224 Query 259 CGGTCAGGCCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTTC 318 || ||| |||||||| | |||||| |||| || ||| ||||||| || ||||| || Sbjct 5223 CG----GGCAAGCATCAGTTGGGGCGGCCGGAGAACGGCGCCGGGAACGTAGCCCC--TC 5170 Query 319 GGGGGGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGCGCTCCGGC 378 ||||||||||||||||| | ||||||||||||| |||||||| |||||| |||| Sbjct 5169 --GGGGTGTTATAGCCCGGCGCACAATGCGGCCCGCCCCGACTGAGGATCGCGCTTCGGC 5112 Query 379 TAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAA 438 ||||||||||||||||| || |||||||||||||| |||||||||||||||||||| Sbjct 5111 CCGGATGCTGGCGTAATGGCCGTGAGCGGCCCGTCTTGAAACACGGACCAAGGAGTCTAC 5052 Query 439 CATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGG 498 |||| |||||||||||||||||||||||||||||||| |||||||||||||||||| ||| Sbjct 5051 CATCCATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGCAATGAAAGTGAACGGAGGCGGG 4992 Query 499 AACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGC 558 | | || | | ||||| ||||||||||| ||||| ||||| ||||||||||| |||| Sbjct 4991 AGCTCGCACGAGCGCACCGTCGACCGATCCCGATGTTCTCGGAAGGATTTGAGTACGAGC 4932 Query 559 ATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAA 618 || || | |||||||||||||||| |||||||||| || |||||| ||||||||| |||| Sbjct 4931 ATGGCCGGTGGGACCCGAAAGATGTTGAACTATGCGTGGATAGGGCGAAGCCAGAAGAAA 4872 Query 619 CTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGG 678 ||||||||||||||| || |||||| ||||||||||||| ||||| || |||| || Sbjct 4871 TTCTGGTGGAGGCTCGTAGTCGTTCTGACGTGCAAATCGATGACCAAATCTGCGTATGGG 4812 Query 679 GGCGA 683 ||||| Sbjct 4811 GGCGA 4807 >seq214 Length=442246 Score = 152 bits (168), Expect = 2e-34 Identities = 145/183 (79%), Gaps = 3/183 (2%) Strand=Plus/Minus Query 501 CCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCAT 560 |||||| || |||||| |||| || | |||| | || || || ||| ||| ||||||| Sbjct 278844 CCCGTG-GGTTGCACCTCCGACTGACCTTGATCTTTT--GAAGGGTTTAAGTGAGAGCAT 278788 Query 561 AGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACT 620 |||| ||||| |||||||||||||||||||||||| || |||||| |||||||| Sbjct 278787 GCCTGTCGGGACTCGAAAGATGGTGAACTATGCCTGAGCGGGCCAAAGCCAAAGGAAACT 278728 Query 621 CTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGG 680 ||||||||||| ||||||| ||| ||||||||||| || || ||| |||||||| || Sbjct 278727 CTGGTGGAGGCCCGCAGCGACACTGACGTGCAAATCGTTCATCTGATTAGGGTATAGCGG 278668 Query 681 CGA 683 || Sbjct 278667 GGA 278665 Score = 147 bits (162), Expect = 9e-33 Identities = 138/176 (78%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 508 GGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTT 567 || |||||| ||||||| | || | || || || ||||||| |||| || |||| Sbjct 260122 GGTTGCACCTCCGACCGACTTTAATCTTTTGAGAAGGGTTTGAGTGAGAGAATGCCTGTC 260063 Query 568 GGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGG 627 |||||||||||||||||||||| ||| ||| ||| ||||||||||||||||||||||| Sbjct 260062 GGGACCCGAAAGATGGTGAACTCTGCTTGAGGGGGGCGAAGCCAGAGGAAACTCTGGTGG 260003 Query 628 AGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||| |||| || || | ||||||||| || || || | ||||||||||| || Sbjct 260002 AGGCCCGCAACGACACTAACATGCAAATCGTTCATCTAACTAGGGTATAGGGGGGA 259947 Score = 147 bits (162), Expect = 9e-33 Identities = 129/161 (80%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 39 CGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAA 98 ||||||| |||||||||||||||||| | || ||| |||||||| | || || |||||| Sbjct 279273 CGAGTCGGGTTGTTTGGGAATGCAGCCCAAATCGGGCGGTAAATTCCATCCAAGGCTAAA 279214 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 || ||| ||||||| |||||| ||||||| || | |||||||||||| | |||| | Sbjct 279213 TACAGGCGAGAGACCAATAGCGAACAAGTACCGTTAGGAAAAGATGAAAAGGAATTTGAA 279154 Query 159 AAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| ||| || | ||||||||| |||||||||| Sbjct 279153 AAGAGAGTCAAAGAGTGCTTGAAATTGTCAGAAGGGAAGCG 279113 Score = 134 bits (148), Expect = 6e-29 Identities = 127/161 (79%), Gaps = 1/161 (1%) Strand=Plus/Minus Query 39 CGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAA 98 ||||||| |||||||||||||||||| | || |||| |||||||| | | || |||||| Sbjct 260545 CGAGTCGGGTTGTTTGGGAATGCAGCCCAAATTGGGCGGTAAATTCCATTCAAGGCTAAA 260486 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 || ||| |||||| |||| | ||||||| | | ||||||||||||| | |||| | Sbjct 260485 TACAGGCGAGAGACTAATAGTGAACAAGTACTGCTA-GGAAAGATGAAAAGGAATTTGAA 260427 Query 159 AAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| ||| || | | ||||||| || ||||||||| Sbjct 260426 AAGAGAGTCAAAGAGTGCTTAAAATTGTCGAGAGGGAAGCG 260386 >seq167 Length=3484751 Score = 87.8 bits (96), Expect = 7e-15 Identities = 89/115 (77%), Gaps = 1/115 (1%) Strand=Plus/Plus Query 501 CCCGTGAGGGT-GCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCA 559 ||| | ||||| ||||| ||||||| | |||| | | || || || |||| |||||| Sbjct 2032231 CCCCTAAGGGTTGCACCGCCGACCGACCTTGATCTTCTGAGAAGGGTTCGAGTGAGAGCA 2032290 Query 560 TAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG 614 | |||| ||||||||||||||||||||| | ||||| | | | |||||||||| Sbjct 2032291 TGTCTGTCTGGACCCGAAAGATGGTGAACTGTACCTGAGTGGAGCGAAGCCAGAG 2032345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079870785200