Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq6024 141 1e-31 seq878 91.5 2e-16 seq411 87.8 2e-15 seq2087 78.8 1e-12 seq596 77.0 5e-12 seq4 73.4 5e-11 >seq6024 Length=163856 Score = 141 bits (156), Expect = 1e-31 Identities = 177/243 (73%), Gaps = 20/243 (8%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| ||||||||||||| || |||||| | ||||| | ||| || |||| Sbjct 113824 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGGAGACC 113766 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| |||||||||||| || || |||||||| || Sbjct 113765 TGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCT------------- 113719 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || || ||||||||||||||||||||||||||| |||||||||| ||||| Sbjct 113718 TTGTG----AGGAG--GCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCT 113665 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 || | |||| | || | ||| ||||||||||||| |||||||||||||||| | Sbjct 113664 TAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGG 113605 Query 246 GTA 248 ||| Sbjct 113604 GTA 113602 Score = 141 bits (156), Expect = 1e-31 Identities = 177/243 (73%), Gaps = 20/243 (8%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| ||||||||||||| || |||||| | ||||| | ||| || |||| Sbjct 141764 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGGAGACC 141822 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| |||||||||||| || || |||||||| || Sbjct 141823 TGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCT------------- 141869 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || || ||||||||||||||||||||||||||| |||||||||| ||||| Sbjct 141870 TTGTG----AGGAG--GCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCT 141923 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 || | |||| | || | ||| ||||||||||||| |||||||||||||||| | Sbjct 141924 TAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGG 141983 Query 246 GTA 248 ||| Sbjct 141984 GTA 141986 >seq878 Length=228605 Score = 91.5 bits (100), Expect = 2e-16 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 |||||||||||||| || ||||||||| |||||| |||| |||||| || |||| | Sbjct 77211 GGCACCCCTTCTCCTGAGGTTACGGGGTCATTTTACCGAGTTCCTTCGACATGGTTCTCT 77152 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 | | ||| ||||| |||||| || ||||||||||||||| |||| Sbjct 77151 CAAGTGCCCGAGTATACTCTACTTGTTCACCTGTGTCGGTTTGGGGTA 77104 >seq411 Length=231414 Score = 87.8 bits (96), Expect = 2e-15 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 146 CCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCCGAAC 205 ||||||||| || |||||| || ||||||||||| |||||| || |||| | | | | Sbjct 111359 CCCTTCTCCTGAGGTTACGTGGTCATTTTGCCGAGTTCCTTCGACATGGTTCTCTCAAGC 111300 Query 206 GCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 ||| |||||| |||||| || ||| ||||||||||| |||| Sbjct 111299 GCCCTAGTATACTCTACTTGTTCACTTGTGTCGGTTTGGGGTA 111257 >seq2087 Length=34464 Score = 78.8 bits (86), Expect = 1e-12 Identities = 69/86 (80%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 140 TGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCAC 199 |||| | |||| |||||||||||||| | || |||||||| |||||||| | ||| | Sbjct 19433 TGGCCCACCTTATCCCGAAGTTACGGAGTCAATTTGCCGAGTTCCTTAATGATTGTTAGC 19374 Query 200 CCGAACGCCTTAGTATTCTCTACCTG 225 | |||||||| ||||||||||| || Sbjct 19373 TCAAACGCCTTCGTATTCTCTACTTG 19348 >seq596 Length=4721113 Score = 77.0 bits (84), Expect = 5e-12 Identities = 75/97 (77%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 ||||| ||||||||||| ||||| || | ||||||| |||||| ||| | | || Sbjct 2134641 GGCACTCCTTCTCCCGATGTTACAGGACTATTTTGCTGAATTCTTTAGAGAGAATTGTTT 2134582 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTC 237 || | ||| |||||||||||||| ||||||||||| Sbjct 2134581 CGCGCTCCTAAGTATTCTCTACCTACCCACCTGTGTC 2134545 >seq4 Length=85910 Score = 73.4 bits (80), Expect = 5e-11 Identities = 66/82 (80%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| || |||||||||||| || |||||| | ||||| | ||| || |||| Sbjct 35870 CCTTCCGGTACTGGGCAGGCGTCAACCCCCATACATGGTCTTAC-GACTTTGCGGAGACC 35928 Query 66 TGTGTTTTTAGTAAACAGTCGC 87 |||||||||||||||||||||| Sbjct 35929 TGTGTTTTTAGTAAACAGTCGC 35950 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694359476552