Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq6024 269 7e-70 seq4 158 3e-36 seq392 131 4e-28 seq2087 123 6e-26 seq46 111 4e-22 seq2140 84.2 6e-14 seq316 77.0 8e-12 >seq6024 Length=163856 Score = 269 bits (298), Expect = 7e-70 Identities = 308/418 (74%), Gaps = 27/418 (6%) Strand=Plus/Minus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| || || ||||||| ||| ||| ||||||| ||| |||||| Sbjct 114014 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 113955 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 113954 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 113895 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCT----TCGCGTTAGCTAACCC 188 | ||||||||||||||| |||||||||||| || ||| | | | || | ||| Sbjct 113894 TAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTCCCCTGTCATCAGGTCACCA 113835 Query 189 CATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTT 248 | || |||||||||||| |||||||||||| ||| |||| | ||| || ||| Sbjct 113834 ACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTT 113775 Query 249 GCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAG 308 || ||| |||||||||| ||||||||||| |||||||| || ||||| Sbjct 113774 GCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACC------CC 113721 Query 309 CTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTT 368 ||| ||| | ||| | ||||||||||||||||||| || || Sbjct 113720 CTTTGTGAGGA-----------------GGCACCCCTTCTCCCGAAGTTACGGGGCTATT 113678 Query 369 TTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAACCAC 426 ||||| |||||||| ||||| |||| || ||| ||||||||||||| | |||| Sbjct 113677 TTGCCGAGTTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCAC 113620 Score = 269 bits (298), Expect = 7e-70 Identities = 308/418 (74%), Gaps = 27/418 (6%) Strand=Plus/Plus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| || || ||||||| ||| ||| ||||||| ||| |||||| Sbjct 141574 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 141633 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 141634 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 141693 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCT----TCGCGTTAGCTAACCC 188 | ||||||||||||||| |||||||||||| || ||| | | | || | ||| Sbjct 141694 TAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTCCCCTGTCATCAGGTCACCA 141753 Query 189 CATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTT 248 | || |||||||||||| |||||||||||| ||| |||| | ||| || ||| Sbjct 141754 ACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTT 141813 Query 249 GCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAG 308 || ||| |||||||||| ||||||||||| |||||||| || ||||| Sbjct 141814 GCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACC------CC 141867 Query 309 CTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTT 368 ||| ||| | ||| | ||||||||||||||||||| || || Sbjct 141868 CTTTGTGAGGA-----------------GGCACCCCTTCTCCCGAAGTTACGGGGCTATT 141910 Query 369 TTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAACCAC 426 ||||| |||||||| ||||| |||| || ||| ||||||||||||| | |||| Sbjct 141911 TTGCCGAGTTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCAC 141968 >seq4 Length=85910 Score = 158 bits (174), Expect = 3e-36 Identities = 163/213 (77%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 79 TTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATTGTTA 138 |||||| |||| |||||||||||||||||||||||||||||||||||| ||||| |||| Sbjct 35746 TTCGTGTGGGTCCGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACTGTTATAGTTA 35805 Query 139 CGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCT----TCGCGTTAGCTAACCCCATCAA 194 | | ||| || |||||||||||| ||| ||| | | | || | ||| | Sbjct 35806 TGACTGCCATTCACCGGGGCTTCGGTCACCGGCTCCCCTGTCATCAGGTCACCAACTTCC 35865 Query 195 TTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAG 254 || ||||||||| || |||||||||||| ||| |||| | ||| || ||||| ||| Sbjct 35866 TTGACCTTCCGGTACTGGGCAGGCGTCAACCCCCATACATGGTCTTACGACTTTGCGGAG 35925 Query 255 TGCTGTGTTTTTAATAAACAGTCGCAGCGGCCT 287 ||||||||||| ||||||||||| ||||| Sbjct 35926 ACCTGTGTTTTTAGTAAACAGTCGCCTGGGCCT 35958 >seq392 Length=1285230 Score = 131 bits (144), Expect = 4e-28 Identities = 191/267 (72%), Gaps = 6/267 (2%) Strand=Plus/Minus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||| |||| || || || ||||||| | ||| | |||||| ||| |||||| Sbjct 125339 GCATGTTCATAGACATGTCTATTTCACCAGGCCTCTCTTCGAGACAATGCCCAGATCGTT 125280 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 || || || ||| ||| | ||||||||| || ||||||||| | ||||||||| ||||| Sbjct 125279 ACACCTTTTGTGTGGGTTGCAACTTACCCAACGAGGAATTTCACCACCTTAGGATCGTTA 125220 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAACCCCATC 192 | ||||| ||||||| || ||||||| |||| ||| || | || | ||| | Sbjct 125219 TAGTTACAATCGCCGTTCACTGGGGCTTTGATC----GCTG-GCATCAGGTCACCAACTT 125165 Query 193 AATTAACCTTCCGGCACCGGGCAGGCGTCA-CACCCTATACGTCCACTTTCGTGTTTGCA 251 || |||||||||||| |||||||||| | ||| |||| | ||| | |||| Sbjct 125164 CCTTTACCTTCCGGCACTAAGCAGGCGTCAGCCCCCCATACATGGTCTTATGACTTTGTG 125105 Query 252 GAGTGCTGTGTTTTTAATAAACAGTCG 278 ||| ||||||||| |||||||||| Sbjct 125104 GAGACTTGTGTTTTTGGTAAACAGTCG 125078 >seq2087 Length=34464 Score = 123 bits (136), Expect = 6e-26 Identities = 197/281 (70%), Gaps = 9/281 (3%) Strand=Plus/Minus Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66 || || | |||| ||| || ||| ||||||||||||| | | |||||||| Sbjct 19763 TAAACAGTATCTGCACTGCTATTCCAATTTCACTGAGCCAATCATCGAGACAGCTGTTGT 19704 Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 |||||||| ||||| |||| | | | | ||| | | || || ||| |||||||||| || Sbjct 19703 ATCGTTACATCATTCATGCAAGACCGCATTTAACGGCCAGGGTATTCCGCTACCTTAAGA 19644 Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGC-------TTCGCGTT 179 || |||| | || ||||||| |||| ||||| ||| |||||| | || || Sbjct 19643 CCCTTATAGGTAAGGCCGCCATTTATCGGGGTTTCCTTCAAGACCTAGCTTATTTTAGTC 19584 Query 180 AGCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACT 239 |||||| ||| |||||| ||| || |||||| | |||||| | |||| | | | Sbjct 19583 AGCTAAGAAAATCCGTTAACCAGCCGACATAGGGCAGACATCACACTCAATACTTTGATT 19524 Query 240 T-TCGTGTT-TGCAGAGTGCTGTGTTTTTAATAAACAGTCG 278 | | | || |||| |||||| |||||| | |||||||||| Sbjct 19523 TGTAATCTTATGCAAAGTGCTTTGTTTTAATTAAACAGTCG 19483 >seq46 Length=2470531 Score = 111 bits (122), Expect = 4e-22 Identities = 117/154 (76%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 11 CTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCG 70 ||||||||||| || || || ||||||| || ||| |||| || ||| || | Sbjct 2345276 CTGCATCTTCATAGACATGTCTATTTCACCAAGCCTCTCTCCGAGATAGTGCCCAAATTG 2345217 Query 71 TTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGT 130 ||||||| ||||||||||||| | |||||| |||||| ||||| | |||||||||| || Sbjct 2345216 TTACGCCTTTCGTGCAGGTCGAAGCTTACCTGACAAGAAATTTTGTTACCTTAGGAATGT 2345157 Query 131 TATTGTTACGGCCGCCGTTTACCGGGGCTTCGAT 164 ||| || || | ||| |||||||||||||| Sbjct 2345156 TATAACTATGGATGTTGTTCACCGGGGCTTCGAT 2345123 >seq2140 Length=3258 Score = 84.2 bits (92), Expect = 6e-14 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66 || |||| |||| ||||| ||| ||||||||||||| | | |||||||| Sbjct 3024 TAAACTGTATCTGCACAGTTATTCCAATTTCACTGAGACAATCATTGAGACAGCTGTTGT 3083 Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 ||||||| ||||| |||| | | | | ||| | | || || ||| ||||||||||||| Sbjct 3084 ATCGTTAAATCATTCATGCAAGACCGCATTTAACGGCCAGGGTATTCCGCTACCTTAGGA 3143 Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAA 167 || | || | || ||||||| || | |||| ||| |||| Sbjct 3144 CCCTCATCGGTAAGGCCGCCATTGATTGGGGGTTCCTTCAA 3184 >seq316 Length=2495659 Score = 77.0 bits (84), Expect = 8e-12 Identities = 68/84 (81%), Gaps = 1/84 (1%) Strand=Plus/Minus Query 79 TTCGTGCAGGTCGGAACTTACCCGACAAGGAA-TTTCGCTACCTTAGGACCGTTATTGTT 137 ||||| ||||| ||||||||||| |||||| |||||||||||||||| |||| | ||| Sbjct 2090110 TTCGTTTTGGTCGAAACTTACCCGAGAAGGAAATTTCGCTACCTTAGGATCGTTGTAGTT 2090051 Query 138 ACGGCCGCCGTTTACCGGGGCTTC 161 |||||| ||| | || | |||| Sbjct 2090050 ACGGCCATTGTTAATCGAGACTTC 2090027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260724049408