Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq6024 338 1e-90 seq392 203 7e-50 seq4 187 5e-45 seq46 143 6e-32 seq112 125 2e-26 seq316 82.4 2e-13 seq627 73.4 8e-11 >seq6024 Length=163856 Score = 338 bits (374), Expect = 1e-90 Identities = 289/353 (82%), Gaps = 8/353 (2%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | || | ||||||||||| || | ||||||||||||| |||||| Sbjct 114014 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 113955 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 113954 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 113895 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGAT-TGCTC---TAACAG 182 ||||||||||||||||| || ||||||| || | ||| | | | || | || Sbjct 113894 TAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTCCCCTGTCATCAGGTCACCA 113835 Query 183 ATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTA 242 | |||| ||||||| |||| |||||||||||||| || |||||| ||||| |||||| Sbjct 113834 ACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTT 113775 Query 243 GCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCG---GCCTGTCA 299 || || ||||||||||||||||||||||||| |||||| || ||||| ||| | Sbjct 113774 GCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCTTTGT 113715 Query 300 TAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 || |||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 113714 GAG-GAGGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTA 113663 Score = 338 bits (374), Expect = 1e-90 Identities = 289/353 (82%), Gaps = 8/353 (2%) Strand=Plus/Plus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | || | ||||||||||| || | ||||||||||||| |||||| Sbjct 141574 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 141633 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 141634 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 141693 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGAT-TGCTC---TAACAG 182 ||||||||||||||||| || ||||||| || | ||| | | | || | || Sbjct 141694 TAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTCCCCTGTCATCAGGTCACCA 141753 Query 183 ATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTA 242 | |||| ||||||| |||| |||||||||||||| || |||||| ||||| |||||| Sbjct 141754 ACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTT 141813 Query 243 GCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCG---GCCTGTCA 299 || || ||||||||||||||||||||||||| |||||| || ||||| ||| | Sbjct 141814 GCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCTTTGT 141873 Query 300 TAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 || |||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 141874 GAG-GAGGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTA 141925 >seq392 Length=1285230 Score = 203 bits (224), Expect = 7e-50 Identities = 248/331 (75%), Gaps = 12/331 (4%) Strand=Plus/Minus Query 27 ATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGG 86 |||||||| | || | | |||||| |||||| |||||||| ||||| ||| |||| | Sbjct 125319 ATTTCACCAGGCCTCTCTTCGAGACAATGCCCAGATCGTTACACCTTTTGTGTGGGTTGC 125260 Query 87 AACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTAC 146 ||||||||| || ||||||||| | ||||||||| |||||||||||| ||||||| || Sbjct 125259 AACTTACCCAACGAGGAATTTCACCACCTTAGGATCGTTATAGTTACAATCGCCGTTCAC 125200 Query 147 TGGGGCTTAAGTTCACT-GCTTCGATTGCTCTAACAGATCCCCTTAACCTTCCAGCACCG 205 |||||||| | || || || || | || || | |||| ||||||| |||| Sbjct 125199 TGGGGCTT-TGATCGCTGGCATC---AGGTC--ACCAACTTCCTTTACCTTCCGGCACTA 125146 Query 206 GGCAGGCGTCAG-CTCCTATACATCGTCTTGCGACTTAGCAGAAACCTGTGTTTTTGGTA 264 ||||||||||| | || |||||| ||||| ||||| | || || ||||||||||||| Sbjct 125145 AGCAGGCGTCAGCCCCCCATACATGGTCTTATGACTTTGTGGAGACTTGTGTTTTTGGTA 125086 Query 265 AACAGTCGCTTGGGCCTATTCTCTG---CGGCCTGTCATAGACAGGCACCCCTTCTCCCT 321 |||||||| | || | | ||| | ||| | || ||||| |||||||||| Sbjct 125085 AACAGTCGTCCGAGCTTGGTAACTGCAACCCCCTTTGTGAG-GAGGCATCCCTTCTCCCG 125027 Query 322 AAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 ||||||| ||| ||||||||||| |||||| Sbjct 125026 AAGTTACAGGGCTATTTTGCCGAGCTCCTTA 124996 >seq4 Length=85910 Score = 187 bits (206), Expect = 5e-45 Identities = 174/218 (80%), Gaps = 10/218 (5%) Strand=Plus/Plus Query 71 CTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGT 130 |||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||| Sbjct 35744 CTTTCGTGTGGGTCCGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACTGTTATAGT 35803 Query 131 TACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATC----- 185 || | | ||| || || ||||||| | |||| | || || || | ||| || Sbjct 35804 TATGACTGCCATTCACCGGGGCTT-CGGTCACCGGCTCCCCTG-TC-ATCAGGTCACCAA 35860 Query 186 --CCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAG 243 |||| ||||||| | || |||||||||||| | || |||||| ||||| |||||| | Sbjct 35861 CTTCCTTGACCTTCCGGTACTGGGCAGGCGTCAACCCCCATACATGGTCTTACGACTTTG 35920 Query 244 CAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCT 281 | || |||||||||||| |||||||||||| ||||||| Sbjct 35921 CGGAGACCTGTGTTTTTAGTAAACAGTCGCCTGGGCCT 35958 >seq46 Length=2470531 Score = 143 bits (158), Expect = 6e-32 Identities = 246/352 (70%), Gaps = 9/352 (3%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 ||||||||| | || | |||||||| || || | |||| ||||||||||| ||| Sbjct 2345274 GCATCTTCATAGACATGTCTATTTCACCAAGCCTCTCTCCGAGATAGTGCCCAAATTGTT 2345215 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 ||||||||||||| ||||| | |||||| |||||| ||||| | |||||||||| |||| Sbjct 2345214 ACGCCTTTCGTGCAGGTCGAAGCTTACCTGACAAGAAATTTTGTTACCTTAGGAATGTTA 2345155 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGAT----TGCTCTAACAG 182 || || || | ||| || ||||||| || | ||| | | | | | || Sbjct 2345154 TAACTATGGATGTTGTTCACCGGGGCTTCGATTGCCAGCTCCCTTGTCATCATGTCACCA 2345095 Query 183 ATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTA 242 | |||| ||| ||| || | ||| | |||||| || |||||| |||| | ||| Sbjct 2345094 ACTTCCTTGACCCTCCGACA-CTAGCAAGTGTCAGCCCCCATACATGATCTTTAGGCTTT 2345036 Query 243 GCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCT--GCGGCCTGTCAT 300 | || |||| ||||||| ||| | ||| ||| | |||| || || | ||| | || Sbjct 2345035 GTGGAGACCTATGTTTTTAGTACATAGTAGCTCGAGCCTGGTCACTAGGACCCCTTTTAT 2344976 Query 301 AGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 ||||| ||||||| || || ||| |||| |||||| ||||||| ||| Sbjct 2344975 GAGGAGGCA-CCCTTCT-CCAAAATTATGGGGCTATTTTGTCGAGTTCTTTA 2344926 >seq112 Length=1034475 Score = 125 bits (138), Expect = 2e-26 Identities = 121/154 (79%), Gaps = 1/154 (1%) Strand=Plus/Plus Query 200 GCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGAAACCTGTGTTTT 259 |||| |||||||| | ||| || |||||| |||| | |||| || || ||||||||||| Sbjct 677357 GCACTGGGCAGGCATTAGCCCCCATACATGATCTTACAACTTTGCGGAGACCTGTGTTTT 677416 Query 260 TGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTCATAGA-CAGGCACCCCTTCTC 318 ||||||||||||| |||||| || |||| || | || |||||||||||||| Sbjct 677417 TGGTAAACAGTCGGCCGGGCCTGATCACTGCAACCCCTTTGTGAGGAGGCACCCCTTCTC 677476 Query 319 CCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 || ||||||||||| |||||||| || |||||| Sbjct 677477 CCGAAGTTACGGGGCTATTTTGCCAAGCTCCTTA 677510 >seq316 Length=2495659 Score = 82.4 bits (90), Expect = 2e-13 Identities = 59/67 (88%), Gaps = 1/67 (1%) Strand=Plus/Minus Query 72 TTTCGTGCGGGTCGGAACTTACCCGACAAGGAA-TTTCGCTACCTTAGGACCGTTATAGT 130 |||||| ||||| ||||||||||| |||||| |||||||||||||||| |||| |||| Sbjct 2090111 TTTCGTTTTGGTCGAAACTTACCCGAGAAGGAAATTTCGCTACCTTAGGATCGTTGTAGT 2090052 Query 131 TACGGCC 137 ||||||| Sbjct 2090051 TACGGCC 2090045 >seq627 Length=710457 Score = 73.4 bits (80), Expect = 8e-11 Identities = 89/116 (77%), Gaps = 4/116 (3%) Strand=Plus/Minus Query 251 CTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTCATA-GAC-AGGC 308 ||||||||||||||||||||||| |||||| | | ||| | ||| | | || || | Sbjct 3677 CTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGT-CACTGAGACCTCTTTTGTGAGGAGTC 3619 Query 309 ACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACAATAGTTCTC 364 |||| |||| || ||||||| ||| ||||||||||||| ||| || |||| || Sbjct 3618 ACCC-TTCTTCCGAAGTTACAGGGCTATTTTGCCGAGTTTCTTCGAAAAAGTTGTC 3564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062336001024