Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq6024 475 1e-131 seq707 475 1e-131 seq867 383 5e-104 seq130 167 7e-39 seq565 91.5 4e-16 seq349 87.8 5e-15 seq65 82.4 2e-13 seq3566 80.6 8e-13 seq2087 77.0 1e-11 seq1423 77.0 1e-11 seq411 75.2 3e-11 >seq6024 Length=163856 Score = 475 bits (526), Expect = 1e-131 Identities = 406/497 (82%), Gaps = 3/497 (1%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 108894 TACGTTCGCAAGAATGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCAT 108953 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| |||| |||||||||||||||| |||||||| | || |||| Sbjct 108954 GTGGTTTAATTCGATGCAAAGCGAAGAACCTTACCAGGGCTTGACATGCCGCGAATCCTC 109013 Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAG 180 | || | ||| | | || |||||| || | ||||||| ||||||| ||||||||| Sbjct 109014 TTGAAAGAGAAGAGTGCC-TTCGGGA-ACGCGGACACAGGTGGTGCATGGCTGTCGTCAG 109071 Query 181 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGC 240 |||||| ||| || ||||||||||||||||||||||||||||||||| |||||||||| Sbjct 109072 CTCGTGCCGTAAGGTGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTCGTGCTTAGTTGC 109131 Query 241 CATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGAC 300 || || |||| || || || || |||||||||||| || ||||||||||||| ||| Sbjct 109132 CACTGTTGAGTTTGGAACCCTGAGCAGACTGCCGGTGATAAGCCGGAGGAAGGTGAGGAT 109191 Query 301 GACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATAC 360 |||||||| ||||||||||||||||| ||||| |||||||||||||||||| | || Sbjct 109192 GACGTCAAGTCATCATGCCCCTTATGCCCTGGGCGACACACGTGCTACAATGGCCGGGAC 109251 Query 361 AAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTG 420 |||||| |||| |||||||| ||| || ||| ||| || |||||||||||||| Sbjct 109252 AAAGGGTCGCGATCCCGCGAGGGTGAGCTAACTCCAAAAACCCGTCCTCAGTTCGGATTG 109311 Query 421 TAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAG-CATGCTA 479 || |||||||||| || ||||||| ||||||||||||||||| | |||| ||| | Sbjct 109312 CAGGCTGCAACTCGCCTGCATGAAGCCGGAATCGCTAGTAATCGCCGGTCAGCCATACGG 109371 Query 480 CGGTGAATACGTTCCCG 496 |||||||| |||||||| Sbjct 109372 CGGTGAATTCGTTCCCG 109388 Score = 475 bits (526), Expect = 1e-131 Identities = 406/497 (82%), Gaps = 3/497 (1%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 146694 TACGTTCGCAAGAATGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCAT 146635 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| |||| |||||||||||||||| |||||||| | || |||| Sbjct 146634 GTGGTTTAATTCGATGCAAAGCGAAGAACCTTACCAGGGCTTGACATGCCGCGAATCCTC 146575 Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAG 180 | || | ||| | | || |||||| || | ||||||| ||||||| ||||||||| Sbjct 146574 TTGAAAGAGAAGAGTGCC-TTCGGGA-ACGCGGACACAGGTGGTGCATGGCTGTCGTCAG 146517 Query 181 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGC 240 |||||| ||| || ||||||||||||||||||||||||||||||||| |||||||||| Sbjct 146516 CTCGTGCCGTAAGGTGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTCGTGCTTAGTTGC 146457 Query 241 CATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGAC 300 || || |||| || || || || |||||||||||| || ||||||||||||| ||| Sbjct 146456 CACTGTTGAGTTTGGAACCCTGAGCAGACTGCCGGTGATAAGCCGGAGGAAGGTGAGGAT 146397 Query 301 GACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATAC 360 |||||||| ||||||||||||||||| ||||| |||||||||||||||||| | || Sbjct 146396 GACGTCAAGTCATCATGCCCCTTATGCCCTGGGCGACACACGTGCTACAATGGCCGGGAC 146337 Query 361 AAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTG 420 |||||| |||| |||||||| ||| || ||| ||| || |||||||||||||| Sbjct 146336 AAAGGGTCGCGATCCCGCGAGGGTGAGCTAACTCCAAAAACCCGTCCTCAGTTCGGATTG 146277 Query 421 TAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAG-CATGCTA 479 || |||||||||| || ||||||| ||||||||||||||||| | |||| ||| | Sbjct 146276 CAGGCTGCAACTCGCCTGCATGAAGCCGGAATCGCTAGTAATCGCCGGTCAGCCATACGG 146217 Query 480 CGGTGAATACGTTCCCG 496 |||||||| |||||||| Sbjct 146216 CGGTGAATTCGTTCCCG 146200 >seq707 Length=3952773 Score = 475 bits (526), Expect = 1e-131 Identities = 406/497 (82%), Gaps = 3/497 (1%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 461754 TACGTTCGCAAGAATGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCAT 461695 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| |||| |||||||||||||||| |||||||| | || |||| Sbjct 461694 GTGGTTTAATTCGATGCAAAGCGAAGAACCTTACCAGGGCTTGACATGCCGCGAATCCTC 461635 Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAG 180 | || | ||| | | || |||||| || | ||||||| ||||||| ||||||||| Sbjct 461634 TTGAAAGAGAAGAGTGCC-TTCGGGA-ACGCGGACACAGGTGGTGCATGGCTGTCGTCAG 461577 Query 181 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGC 240 |||||| ||| || ||||||||||||||||||||||||||||||||| |||||||||| Sbjct 461576 CTCGTGCCGTAAGGTGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTCGTGCTTAGTTGC 461517 Query 241 CATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGAC 300 || || |||| || || || || |||||||||||| || ||||||||||||| ||| Sbjct 461516 CACTGTTGAGTTTGGAACCCTGAGCAGACTGCCGGTGATAAGCCGGAGGAAGGTGAGGAT 461457 Query 301 GACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATAC 360 |||||||| ||||||||||||||||| ||||| |||||||||||||||||| | || Sbjct 461456 GACGTCAAGTCATCATGCCCCTTATGCCCTGGGCGACACACGTGCTACAATGGCCGGGAC 461397 Query 361 AAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTG 420 |||||| |||| |||||||| ||| || ||| ||| || |||||||||||||| Sbjct 461396 AAAGGGTCGCGATCCCGCGAGGGTGAGCTAACTCCAAAAACCCGTCCTCAGTTCGGATTG 461337 Query 421 TAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAG-CATGCTA 479 || |||||||||| || ||||||| ||||||||||||||||| | |||| ||| | Sbjct 461336 CAGGCTGCAACTCGCCTGCATGAAGCCGGAATCGCTAGTAATCGCCGGTCAGCCATACGG 461277 Query 480 CGGTGAATACGTTCCCG 496 |||||||| |||||||| Sbjct 461276 CGGTGAATTCGTTCCCG 461260 >seq867 Length=178126 Score = 383 bits (424), Expect = 5e-104 Identities = 387/498 (78%), Gaps = 8/498 (2%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| |||||| |||||||||||| |||| | |||| ||||||| |||||| Sbjct 17101 TACGTTCGCAAGAATGAAACACAAAGGAATTGATGGGGGCTCGCATAAGCGGTAGAGCAT 17160 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| |||| |||||||||||||||| |||||||| | || |||| Sbjct 17161 GTGGTTTAATTCGATGCAAAGCGAAGAACCTTACCAGGGCTTGACATGCCGCGAATCCTC 17220 Query 121 TAGAGATAG--AGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTC 178 | || | || ||| | || |||||| || | ||||||| ||||||| ||||||| Sbjct 17221 TTGAAAGAGGAAGGATGCC--TTCGGGA-ACGCGGACACAGGTGGTGCATGGATGTCGTC 17277 Query 179 AGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTT 238 |||||||| ||| || ||||||||||||| | |||| ||||||| ||||| |||||||| Sbjct 17278 AGCTCGTGCCGTAAGGTGTTGGGTTAAGTACTGCAATGAGCGCAGCCCTTGTGCTTAGTT 17337 Query 239 GCCATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGG 298 |||| || |||| | | || || ||||||||||| || ||||||||||||| || Sbjct 17338 GCCACTGTTGAGTTTGAAAGACTGAGCAAACTGCCGGTGATAAGCCGGAGGAAGGTGAGG 17397 Query 299 ACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAAT 358 | || ||||| |||||||| |||||||| | ||||| |||||| ||||||||||| | Sbjct 17398 ATGATGTCAAGTCATCATGACCCTTATGCTCTGGGCGACACACATGCTACAATGGCCGGG 17457 Query 359 ACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGAT 418 |||||||| | | |||||||| ||| || ||| ||| | |||||||||||| Sbjct 17458 ACAAAGGG--TCAATCCCGCGAGGGTGAGCTAACTCCAAAAACCCATCCTCAGTTCGGAT 17515 Query 419 TGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAG-CATGC 477 || | |||||||||| || |||||||||||||||||||||||| |||| ||| | Sbjct 17516 TGCAAGCTGCAACTCGCCTGCATGAAGCTGGAATCGCTAGTAATCACCAGTCAGTCATAC 17575 Query 478 TACGGTGAATACGTTCCC 495 | |||||| ||||||| Sbjct 17576 GGCTGTGAATTCGTTCCC 17593 >seq130 Length=596422 Score = 167 bits (184), Expect = 7e-39 Identities = 234/322 (73%), Gaps = 20/322 (6%) Strand=Plus/Plus Query 9 CAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTTA 68 ||||| ||||||||| |||||| || | || | | |||||| |||||||||||||||||| Sbjct 308789 CAAGGATGAAACTCAGAGGAATAGATGTGGGCTCACACAAGTGGTGGAGCATGTGGTTTA 308848 Query 69 ATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTCT-AGAGAT 127 || ||| | || ||||||||||||| || || | ||| ||||| ||| | Sbjct 308849 AT-CGATGTAAAGCGAAGAACCTTA---------GATATGCCGTGAATCCTCTTAGA-AG 308897 Query 128 AGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAGCTCGTGT 187 ||| | | || ||||| | | ||||||| ||||||| |||| | |||| |||| Sbjct 308898 AGAAGAGTGCC-TTCGGTA-ATGCTGACACAGGTGGTGCATGGCTGTCATTAGCTTGTGT 308955 Query 188 CGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTT----AAGCTTAGTTGCCAT 243 || | ||||||||||||||||| ||| ||| ||| | || ||| ||||| ||| Sbjct 308956 TGTAATGTGTTGGGTTAAGTCCCGTAACAAGCCCAATCTTTGTGGAAG--TAGTTTCCAA 309013 Query 244 CATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGAC 303 || |||| || | || || ||| | ||||| || |||||||||||| ||| ||| Sbjct 309014 TGTTGAGTTTGGAGCCCTGAGCAAACTACTGGTGATAAGTCGGAGGAAGGTGAGGATGAC 309073 Query 304 GTCAAATCATCATGCCCCTTAT 325 ||||| | |||||| ||||||| Sbjct 309074 GTCAAGTTATCATGTCCCTTAT 309095 >seq565 Length=1311897 Score = 91.5 bits (100), Expect = 4e-16 Identities = 70/82 (85%), Gaps = 2/82 (2%) Strand=Plus/Plus Query 15 TGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGA 74 |||||||||||||||||| |||| || |||||||||||| |||||||||||||||||| Sbjct 1095870 TGAAACTCAAAGGAATTGCCGGG--CCTGCACAAGCGGTGCTGCATGTGGTTTAATTCGA 1095927 Query 75 AGCAACGCGAAGAACCTTACCA 96 ||| || | |||||||||| Sbjct 1095928 TACAAGACGCAAAACCTTACCA 1095949 >seq349 Length=755248 Score = 87.8 bits (96), Expect = 5e-15 Identities = 60/67 (90%), Gaps = 2/67 (3%) Strand=Plus/Plus Query 8 GCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTT 67 ||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||| Sbjct 32238 GCAAGACCGAAACTCAAAGGAATTGACGGGGGCCTGCACAAGCGGTGGAGCATGTGGTTT 32297 Query 68 --AATTC 72 ||||| Sbjct 32298 CCAATTC 32304 >seq65 Length=1854670 Score = 82.4 bits (90), Expect = 2e-13 Identities = 86/112 (77%), Gaps = 1/112 (1%) Strand=Plus/Minus Query 386 AGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAG 445 ||| || ||| ||| || |||| ||||||||| | |||||||||| || |||||| Sbjct 1594110 AGCTAACTCCAAAAACCCGTCCTCAATTCGGATTGCGGGCTGCAACTCGCCTGCATGAAG 1594051 Query 446 CTGGAATCGCTAGTAATCGTAGATCAG-CATGCTACGGTGAATACGTTCCCG 496 | ||||||||||||||||| | | || ||| | |||||||| ||||||| Sbjct 1594050 CCGGAATCGCTAGTAATCGCCGGTTAGCCATCCGGCGGTGAATTTGTTCCCG 1593999 >seq3566 Length=222 Score = 80.6 bits (88), Expect = 8e-13 Identities = 116/162 (72%), Gaps = 4/162 (2%) Strand=Plus/Plus Query 330 TGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAAGCA 389 ||||||| | |||||| ||| | | ||||||||| ||||| | | || | ||| Sbjct 7 TGGGCTATAGACGTGCCACATATGCCTTTACAAAGGGAAGCGAGATTGTGAAATGGAGCT 66 Query 390 AATCCCATAAAGTTGTTCTCAGT--TCGG--ATTGTAGTCTGCAACTCGACTATATGAAG 445 ||||| ||| | | | | | ||| ||||||||||| |||||||||| ||||| Sbjct 67 AATCCTCAAAATTGGACATAATTATTCGTGAATTGTAGTCTGAAACTCGACTACATGAAT 126 Query 446 CTGGAATCGCTAGTAATCGTAGATCAGCATGCTACGGTGAAT 487 |||||| ||||||||||| |||| || | ||||||||| Sbjct 127 ATGGAATTACTAGTAATCGTGTATCATCACGTCACGGTGAAT 168 >seq2087 Length=34464 Score = 77.0 bits (84), Expect = 1e-11 Identities = 137/197 (70%), Gaps = 6/197 (3%) Strand=Plus/Plus Query 296 GGGACGACGTCAAATCATCATGCCC----CTTATGATTTGGGCTACACACGTGCTACAAT 351 ||||| | | ||| |||||||| || || | | | ||||||| | |||||| ||| Sbjct 32531 GGGACTAAGACAAGTCATCATGACCTAAACTCA-GTTGTGGGCTATAGACGTGCCACATG 32589 Query 352 GGACAATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAG 411 | | | |||||||| || ||| | || | ||| |||||| ||| | | | Sbjct 32590 TGCCTAGACAAAGGGATGCAAAATTGTGAATTTGAGCTAATCCCCAAAATAGGATAAAAA 32649 Query 412 TTCGGA-TTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATC 470 || || |||||||||| || ||||||| ||||| ||||| ||||||||||| ||| Sbjct 32650 TTATGAATTGTAGTCTGTAATTCGACTACATGAAAAAGGAATTACTAGTAATCGTGAATC 32709 Query 471 AGCATGCTACGGTGAAT 487 | || | ||||||||| Sbjct 32710 ACCACGTCACGGTGAAT 32726 >seq1423 Length=511212 Score = 77.0 bits (84), Expect = 1e-11 Identities = 66/82 (80%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 375 CCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCG 434 |||||||| ||| || ||| ||| || |||||||||||||| || |||||||||| Sbjct 420926 CCGCGAGGGTGAGCTAACTCCAAAAACCCGTCCTCAGTTCGGATTGCAGGCTGCAACTCG 420867 Query 435 ACTATATGAAGCTGGAATCGCT 456 ||| ||||||| ||||||||| Sbjct 420866 CCTACATGAAGCCGGAATCGCT 420845 >seq411 Length=231414 Score = 75.2 bits (82), Expect = 3e-11 Identities = 90/121 (74%), Gaps = 1/121 (1%) Strand=Plus/Plus Query 375 CCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCG 434 |||||||| |||| || ||| ||| | |||||||||||||| || ||| ||||| Sbjct 29463 CCGCGAGGGTAAGCTAACTCCAAAAATCCATCCTCAGTTCGGATTGCAGGCTGGAACTCA 29522 Query 435 ACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCA-GCATGCTACGGTGAATACGTTC 493 | |||||| ||||||||||||||||| | ||| ||| | ||||||| ||||| Sbjct 29523 CTTGCATGAAGTCGGAATCGCTAGTAATCGCCGGTCATCCATACGGTGGTGAATTCGTTC 29582 Query 494 C 494 | Sbjct 29583 C 29583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503909399040