Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq1930 365 7e-99 seq97 306 6e-81 seq1868 300 3e-79 seq54 206 4e-51 seq267 93.3 7e-17 >seq1930 Length=7350 Score = 365 bits (404), Expect = 7e-99 Identities = 236/257 (92%), Gaps = 1/257 (0%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3325 ACTCGTTGGCTCTGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 3384 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||||||||||| |||| || ||| ||||||||||||||||||| || Sbjct 3385 CCTGTTATTGCCTCAAACTTCCATCGGCTTGA-GCCGATAGTCCCTCTAAGAAGCCGGCG 3443 Query 122 ACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAA 181 ||| ||| || | ||||||||||||||||||||||||||||||||||| |||||| Sbjct 3444 ACCCGCCAAAGCGGGCCTGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGCAATTAA 3503 Query 182 CCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAA 241 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3504 GCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAA 3563 Query 242 AGAGCTATCAATCTGTC 258 |||||| ||| |||||| Sbjct 3564 AGAGCTCTCAGTCTGTC 3580 >seq97 Length=1410092 Score = 306 bits (338), Expect = 6e-81 Identities = 226/261 (87%), Gaps = 6/261 (2%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 400471 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 400412 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||||||||| | | || |||| | |||||||||||||||||| ||| Sbjct 400411 CCTGTTATTGCCTCAAACTTCCTTGGCCTAGAAGGCCATAGTCCCTCTAAGAAGCTGGCC 400352 Query 122 ACCAAC---CATAGTCG-ATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177 | | || || || | ||| |||||||| | ||||||||||||||| ||||| Sbjct 400351 GCGGAGGGTCACCTCCGCATAG--CTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAA 400294 Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 400293 TTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 400234 Query 238 AGAAAGAGCTATCAATCTGTC 258 |||||||||| ||| |||||| Sbjct 400233 AGAAAGAGCTCTCAGTCTGTC 400213 >seq1868 Length=2880 Score = 300 bits (332), Expect = 3e-79 Identities = 222/258 (86%), Gaps = 2/258 (1%) Strand=Plus/Minus Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 |||||| |||||||||||||||||||||||||| |||| | ||||||||||||||||||| Sbjct 2289 TACTCGCTGGCTCCGTCAGTGTAGCGCGCGTGCTGCCCGGGACATCTAAGGGCATCACAG 2230 Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 ||||||| |||||||| |||||| |||| |||| ||||||||||| ||||||| || Sbjct 2229 ACCTGTTTTTGCCTCA--CTTCCAACGGCTTTGAGCCGATAGTCCCTCTGAGAAGCCGGC 2172 Query 121 CACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 180 ||| || || | |||||||| |||||| ||||||||||||||||||| ||||| Sbjct 2171 GGCCAGCCGGAGCTGGCCGGGCTATTCAGCAGGAAAAGGTCTCGTTCGTTATCGCAATTA 2112 Query 181 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 240 | ||||||||||||||||| |||||| |||||||||||||||||||||| |||||||| Sbjct 2111 AGCAGACAAATCACTCCACGAACTAAAAACGGCCATGCACCACCACCCACGAAATCAAGA 2052 Query 241 AAGAGCTATCAATCTGTC 258 ||||||| |||||||||| Sbjct 2051 AAGAGCTCTCAATCTGTC 2034 >seq54 Length=3626826 Score = 206 bits (228), Expect = 4e-51 Identities = 164/194 (85%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1504959 TCAGTGTAGCACGCGTGCGGCCCAGAACATCTAAGGGCATCACAAACCTGTTATTGCCTC 1504900 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAA---CCATAG 132 |||||||| | | || |||| | |||||||||||||||||| ||| | | || Sbjct 1504899 AAACTTCCTTGGCCTAGAAGGCCATAGTCCCTCTAAGAAGCTGGCCGCGGAGGGTCACCT 1504840 Query 133 TCG-ATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAAT 191 || || |||| |||||||| | ||||||||||||||| ||||||||||||||||||| Sbjct 1504839 CCGCAT--AGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAATTAACCAGACAAAT 1504782 Query 192 CACTCCACCAACTA 205 | |||||||||||| Sbjct 1504781 CGCTCCACCAACTA 1504768 Score = 161 bits (178), Expect = 2e-37 Identities = 137/166 (83%), Gaps = 6/166 (4%) Strand=Plus/Minus Query 97 CAATAGTCCCTCTAAGAAGCCAGCCACCAAC---CATAGTCG-ATGGGGCTATTTAGCAG 152 |||||||||||||||||||| |||| | | || || || | ||| |||||| Sbjct 1504588 CAATAGTCCCTCTAAGAAGCTAGCCGCGGAGAGTCACCTCCGCATAG--CTAGTTAGCAA 1504531 Query 153 GTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGG 212 | | ||||||| ||||||| ||||||||||||||||||| ||||||||||||||||| | Sbjct 1504530 GCTGAGGTCTCATTCGTTAATGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACAG 1504471 Query 213 CCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||||||||||| ||||||||||| | ||| |||||| Sbjct 1504470 CCATGCACCACCACCCATAGAGTCAAGAAAGAGGTCTCAGTCTGTC 1504425 >seq267 Length=1550236 Score = 93.3 bits (102), Expect = 7e-17 Identities = 73/86 (85%), Gaps = 1/86 (1%) Strand=Plus/Plus Query 174 GGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGA 233 ||||||||||| |||||||| |||||||||||||||| ||||||||||| || ||||| Sbjct 1305208 GGAATTAACCACACAAATCAATCCACCAACTAAGAACACGCATGCACCACCGCCAATAGA 1305267 Query 234 ATCAAG-AAAGAGCTATCAATCTGTC 258 || ||| ||| | || ||||| |||| Sbjct 1305268 ATTAAGAAAAAAACTCTCAATTTGTC 1305293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796753500744