Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq1851 480 1e-133 seq679 408 7e-112 seq214 316 3e-84 seq38 279 9e-73 seq2779 143 5e-32 >seq1851 Length=5936 Score = 480 bits (532), Expect = 1e-133 Identities = 283/295 (96%), Gaps = 7/295 (2%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 |||||||||| |||||||||||| ||||||||| |||||||||| ||||||||| Sbjct 2301 TACTAAGCGGTATTACCATTGGGACGACGGTCAGCAGTAGGGTA-------CCTGTCTCA 2353 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2354 CGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 2413 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2414 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 2473 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2474 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 2533 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCAC 295 |||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2534 CAAATTCCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCAC 2588 >seq679 Length=60857 Score = 408 bits (452), Expect = 7e-112 Identities = 267/293 (91%), Gaps = 1/293 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | |||||||||| | | | || |||||||||||||||||||||||||||||| Sbjct 26288 TACTAGGTTGAATTACCATCGCGAC-ACCATCATCAGTAGGGTAAAACTAACCTGTCTCA 26230 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 ||||||||||||||||||||||||||||||| |||||||||||||||||| ||| || Sbjct 26229 CGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGA 26170 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 26169 ATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 26110 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | Sbjct 26109 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTT 26050 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 |||||| ||| || |||||||||||||||||||| |||||| |||| |||||| Sbjct 26049 CAAATTCCGAAGGTCTAAAGGATCGATAGGCCACGCTTTCACGGTTCGTATTC 25997 >seq214 Length=442246 Score = 316 bits (350), Expect = 3e-84 Identities = 248/294 (84%), Gaps = 2/294 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | |||||||||| | | || |||||| ||||||||||||||||||||||| Sbjct 257871 TACTAGGTTGAATTACCATCACGAC-ACCATCATCAATAGGGTAAAACTAACCTGTCTCA 257929 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 | | |||| ||||| ||||| ||||||||| ||||||||| |||||||| ||| || Sbjct 257930 CAATGATCTACACCCAACTCACATTCCCTATTGGTGGGTGAATAATCCAACACTTGGTGA 257989 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 |||||||||| ||||||||||||||||||||| ||| |||||||||||||||| |||| Sbjct 257990 ATTCTGCTTCACAATGATAGGAAGAGCCGACATCAAAGAATCAAAAAGCAACGTCACTAT 258049 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 |||||||||||||||||||||||||| ||||| ||||||||||| || |||||||||| | Sbjct 258050 GAACGCTTGGCTGCCACAAGCCAGTTGTCCCTATGGTAACTTTTTTGACACCTCTAGCTT 258109 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 ||||||| || || |||||||||| ||| | || |||||| |||| |||||| Sbjct 258110 CAAATTTTGATGGTCTAAAGGATCAATATG-CATGCTTTCACGGTTCATATTCA 258162 Score = 82.4 bits (90), Expect = 1e-13 Identities = 66/77 (86%), Gaps = 2/77 (3%) Strand=Plus/Plus Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270 |||||||||||||| || ||||||||| ||||||||||| || |||||||||| ||||| Sbjct 276775 CTGTGGTAACTTTTTTGATACCTCTAGCTTCAAATTTCGATGGTCTAAAGGATCAATAGG 276834 Query 271 CCACAC-TTTCATGGTT 286 || | |||||||||| Sbjct 276835 -TACGCTTTTCATGGTT 276850 >seq38 Length=1328481 Score = 279 bits (308), Expect = 9e-73 Identities = 238/291 (82%), Gaps = 2/291 (1%) Strand=Plus/Plus Query 3 CTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCATG 62 ||||| ||||||| |||| | || |||| || ||||||||||||| |||||||| Sbjct 317623 CTAAGTTGAATTACTATTGCAAC-ACTATCATTAGGAGGGTAAAACTAATCTGTCTCAAA 317681 Query 63 ACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAAT 122 | ||||||||| ||||||| | |||||| || ||| || ||| |||| ||| |||| Sbjct 317682 A-GGTCTAAACTCAGCTCATATCTCCTATTGGTAGGTAAATAATTCAACACTTGATGAAT 317740 Query 123 TCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGA 182 || |||| |||||||||||||||||||| ||||||||||||||||| ||| |||||| Sbjct 317741 TCAGCTTTACAATGATAGGAAGAGCCGACATTGAAGGATCAAAAAGCAATGTCACTATGA 317800 Query 183 ACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCA 242 | |||||||| | |||||| ||||||||||||||||||||||||| | |||||||| ||| Sbjct 317801 ATGCTTGGCTACAACAAGCTAGTTATCCCTGTGGTAACTTTTCTGACGCCTCTAGCTTCA 317860 Query 243 AATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 |||||| | || ||||||||| |||||| |||||||||| || |||||| Sbjct 317861 AATTTCAAAGGTCTAAAGGATTGATAGGTCACACTTTCACAATTCGTATTC 317911 >seq2779 Length=2288 Score = 143 bits (158), Expect = 5e-32 Identities = 87/92 (95%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 |||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||| Sbjct 239 TACTAAGCGGTATTACCGTTGGGGCGACCTTCATCAGTAGGGTAAAACTAACCTGTCTCA 298 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATT 92 ||||||||||||||||||||||||||||||| Sbjct 299 CGACGGTCTAAACCCAGCTCACGTTCCCTATT 330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854348530944