Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq6024 183 6e-44 seq786 131 3e-28 seq241 102 2e-19 >seq6024 Length=163856 Score = 183 bits (202), Expect = 6e-44 Identities = 180/230 (78%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| |||| | |||||| ||||||| |||||||||| ||||||||||| Sbjct 114202 GGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 114261 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229 | ||||| | |||| | ||| ||| | || | | |||||||||||||||||| Sbjct 114262 GTGCAAAGGTTTCCTCGGGCCGGACGGAGATTG-GCCCTCGAGTGCAAAGGCAAAAGGGA 114320 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | |||||||| | |||| | ||| ||||||||||||||| || |||| ||||||| ||| Sbjct 114321 GCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTTGGCCTTAGTGATCCGACGG 114380 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||| || ||||| ||||||||||| ||||||||||| ||| || |||||| Sbjct 114381 TGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 114430 Score = 183 bits (202), Expect = 6e-44 Identities = 180/230 (78%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| |||| | |||||| ||||||| |||||||||| ||||||||||| Sbjct 141386 GGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 141327 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229 | ||||| | |||| | ||| ||| | || | | |||||||||||||||||| Sbjct 141326 GTGCAAAGGTTTCCTCGGGCCGGACGGAGATTG-GCCCTCGAGTGCAAAGGCAAAAGGGA 141268 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | |||||||| | |||| | ||| ||||||||||||||| || |||| ||||||| ||| Sbjct 141267 GCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTTGGCCTTAGTGATCCGACGG 141208 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||| || ||||| ||||||||||| ||||||||||| ||| || |||||| Sbjct 141207 TGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 141158 >seq786 Length=561237 Score = 131 bits (144), Expect = 3e-28 Identities = 168/232 (72%), Gaps = 10/232 (4%) Strand=Plus/Plus Query 113 GACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGC 172 |||||| |||| | |||||| | | ||| |||||||||| ||||||||||| Sbjct 403109 GACAGTCTCAGGTAGACAGTTTCTATAGAGCGTAGGCCTCCCAAAAGGTAACGGAGGCAT 403168 Query 173 CCAAAGATACCCTCAGCTTGGATGGAAA-----CCATGCGCACAGTGCAAAGGCAAAAGG 227 ||||||| | || | ||||||| | || || ||||| ||||||||||| Sbjct 403169 GCAAAGATTTCTTCGGACCGGATGGAGATTGACCCTTGAGCACA-----AAGGCAAAAGG 403223 Query 228 GTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGC 287 | |||| ||| | |||| | ||| ||||||||||||||| || | || |||||| | Sbjct 403224 GAACTTGATTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTTGGTCGTAGTGATCCAAC 403283 Query 288 GGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||||| | ||||| ||||||||||| | ||||||||| ||| | |||||| Sbjct 403284 GGTGCCAAGTGGAAAGGCCGTCGCTCAATGGATAAAAGTTACTTTAGGGATA 403335 >seq241 Length=1151104 Score = 102 bits (112), Expect = 2e-19 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 148 GCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCG 207 |||||||||| |||| ||||||| ||||||| |||| | ||| | | | || Sbjct 388639 GCCTCCCAAAAGGTAATGGAGGCGTGCAAAGATTTCCTCGGGCCGGACGAAGATTG-GCC 388581 Query 208 CACA-GTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAA 266 | || ||||||||| ||||||| | |||| ||| |||| | || |||||||||||| Sbjct 388580 CTCAAGTGCAAAGGTAAAAGGGAGATTGATTGCAGGACCCACCTGTAGAGCAGGGACGAA 388521 Query 267 AGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGC 326 ||| || |||||| | |||||| | ||||| | |||| |||| | ||||||||| Sbjct 388520 AGTTGGCTTTAATGCCTCAACGGTGCCAAGTGGAAGGACCGTTGCTCAATGGATAAAAGT 388461 Query 327 TACCCTGGGGATA 339 ||| || ||||| Sbjct 388460 TACTCTACGGATA 388448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982340820224