Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq6024 230 5e-58 seq707 230 5e-58 seq65 212 1e-52 seq480 80.6 6e-13 >seq6024 Length=163856 Score = 230 bits (254), Expect = 5e-58 Identities = 258/337 (77%), Gaps = 21/337 (6%) Strand=Plus/Minus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 || || | ||| || |||||| | | |||||||||||| || ||||||||||||||| Sbjct 108457 TTCACGACCCGTAGGCCTTCTACCTC-CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCA 108400 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 ||| || |||||||||||||||||||||||||||||||| |||||||||||| ||||| Sbjct 108399 TTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGT 108340 Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181 ||| |||||||||||||| |||||| ||| |||| |||||||||| ||| ||| |||||| Sbjct 108339 GTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCAC 108280 Query 182 CAACTAGCTAATCCGAC-CTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTT 240 ||||||||||||| ||| | || | | || || ||| || ||| ||| Sbjct 108279 CAACTAGCTAATCAGACGCGAGCCCCTCCT-----CG---GGC-----GGATTCCTCCTT 108233 Query 241 TCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCA- 299 | | | | | | || | ||||||||| |||||||| ||| | ||| || ||| Sbjct 108232 TTGCTCCTCAG-CCTACGGGGTATTAGCAGCCGTTTCCAGCTGTTGTTCCC--CTCCCAA 108176 Query 300 -GGCAGATTCCTAGGCATTACTCACCCGTCCGCCGCT 335 ||||| ||| || || ||||||||||||||||| || Sbjct 108175 GGGCAGGTTCTTACGCGTTACTCACCCGTCCGCCACT 108139 Score = 230 bits (254), Expect = 5e-58 Identities = 258/337 (77%), Gaps = 21/337 (6%) Strand=Plus/Plus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 || || | ||| || |||||| | | |||||||||||| || ||||||||||||||| Sbjct 147131 TTCACGACCCGTAGGCCTTCTACCTC-CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCA 147188 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 ||| || |||||||||||||||||||||||||||||||| |||||||||||| ||||| Sbjct 147189 TTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGT 147248 Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181 ||| |||||||||||||| |||||| ||| |||| |||||||||| ||| ||| |||||| Sbjct 147249 GTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCAC 147308 Query 182 CAACTAGCTAATCCGAC-CTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTT 240 ||||||||||||| ||| | || | | || || ||| || ||| ||| Sbjct 147309 CAACTAGCTAATCAGACGCGAGCCCCTCCT-----CG---GGC-----GGATTCCTCCTT 147355 Query 241 TCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCA- 299 | | | | | | || | ||||||||| |||||||| ||| | ||| || ||| Sbjct 147356 TTGCTCCTCAG-CCTACGGGGTATTAGCAGCCGTTTCCAGCTGTTGTTCCC--CTCCCAA 147412 Query 300 -GGCAGATTCCTAGGCATTACTCACCCGTCCGCCGCT 335 ||||| ||| || || ||||||||||||||||| || Sbjct 147413 GGGCAGGTTCTTACGCGTTACTCACCCGTCCGCCACT 147449 >seq707 Length=3952773 Score = 230 bits (254), Expect = 5e-58 Identities = 258/337 (77%), Gaps = 21/337 (6%) Strand=Plus/Plus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 || || | ||| || |||||| | | |||||||||||| || ||||||||||||||| Sbjct 462191 TTCACGACCCGTAGGCCTTCTACCTC-CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCA 462248 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 ||| || |||||||||||||||||||||||||||||||| |||||||||||| ||||| Sbjct 462249 TTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGT 462308 Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181 ||| |||||||||||||| |||||| ||| |||| |||||||||| ||| ||| |||||| Sbjct 462309 GTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCAC 462368 Query 182 CAACTAGCTAATCCGAC-CTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTT 240 ||||||||||||| ||| | || | | || || ||| || ||| ||| Sbjct 462369 CAACTAGCTAATCAGACGCGAGCCCCTCCT-----CG---GGC-----GGATTCCTCCTT 462415 Query 241 TCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCA- 299 | | | | | | || | ||||||||| |||||||| ||| | ||| || ||| Sbjct 462416 TTGCTCCTCAG-CCTACGGGGTATTAGCAGCCGTTTCCAGCTGTTGTTCCC--CTCCCAA 462472 Query 300 -GGCAGATTCCTAGGCATTACTCACCCGTCCGCCGCT 335 ||||| ||| || || ||||||||||||||||| || Sbjct 462473 GGGCAGGTTCTTACGCGTTACTCACCCGTCCGCCACT 462509 >seq65 Length=1854670 Score = 212 bits (234), Expect = 1e-52 Identities = 162/189 (86%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 10 CCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAA 69 ||| || |||||| | | |||||||||||| || |||||||||||||||||| || Sbjct 772996 CCGTAGGCCTTCTACCTC-CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAA 772939 Query 70 TATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGA 129 ||||||||||||||||||| |||||||||||| |||||||||||| | |||||| |||| Sbjct 772938 AATTCCCCACTGCTGCCTCCTGTAGGAGTCTGGGCCGTGTCTCAGTCCAAGTGTGGCTGA 772879 Query 130 TCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGC 189 |||||||||| |||||| ||| |||| |||||||||| ||| ||| |||||||||||||| Sbjct 772878 TCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGC 772819 Query 190 TAATCCGAC 198 ||||| ||| Sbjct 772818 TAATCAGAC 772810 >seq480 Length=766732 Score = 80.6 bits (88), Expect = 6e-13 Identities = 61/71 (86%), Gaps = 1/71 (1%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || ||||||||||| |||||| || |||||||||||||||||| Sbjct 611428 CACGCGGCATTG-CTCCGTCAGGCTTTCGACCATTGCGGAAAATTCCCCACTGCTGCCTC 611486 Query 89 CCGTAGGAGTC 99 | ||||||||| Sbjct 611487 CTGTAGGAGTC 611497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071935422720