Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02]
6,024 sequences; 318,527,106 total letters
Query= AAMG01001178.1
Length=367
Score E
Sequences producing significant alignments: (Bits) Value
seq6024 230 5e-58
seq707 230 5e-58
seq65 212 1e-52
seq480 80.6 6e-13
>seq6024
Length=163856
Score = 230 bits (254), Expect = 5e-58
Identities = 258/337 (77%), Gaps = 21/337 (6%)
Strand=Plus/Minus
Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61
|| || | ||| || |||||| | | |||||||||||| || |||||||||||||||
Sbjct 108457 TTCACGACCCGTAGGCCTTCTACCTC-CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCA 108400
Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121
||| || |||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 108399 TTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGT 108340
Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181
||| |||||||||||||| |||||| ||| |||| |||||||||| ||| ||| ||||||
Sbjct 108339 GTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCAC 108280
Query 182 CAACTAGCTAATCCGAC-CTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTT 240
||||||||||||| ||| | || | | || || ||| || ||| |||
Sbjct 108279 CAACTAGCTAATCAGACGCGAGCCCCTCCT-----CG---GGC-----GGATTCCTCCTT 108233
Query 241 TCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCA- 299
| | | | | | || | ||||||||| |||||||| ||| | ||| || |||
Sbjct 108232 TTGCTCCTCAG-CCTACGGGGTATTAGCAGCCGTTTCCAGCTGTTGTTCCC--CTCCCAA 108176
Query 300 -GGCAGATTCCTAGGCATTACTCACCCGTCCGCCGCT 335
||||| ||| || || ||||||||||||||||| ||
Sbjct 108175 GGGCAGGTTCTTACGCGTTACTCACCCGTCCGCCACT 108139
Score = 230 bits (254), Expect = 5e-58
Identities = 258/337 (77%), Gaps = 21/337 (6%)
Strand=Plus/Plus
Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61
|| || | ||| || |||||| | | |||||||||||| || |||||||||||||||
Sbjct 147131 TTCACGACCCGTAGGCCTTCTACCTC-CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCA 147188
Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121
||| || |||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 147189 TTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGT 147248
Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181
||| |||||||||||||| |||||| ||| |||| |||||||||| ||| ||| ||||||
Sbjct 147249 GTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCAC 147308
Query 182 CAACTAGCTAATCCGAC-CTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTT 240
||||||||||||| ||| | || | | || || ||| || ||| |||
Sbjct 147309 CAACTAGCTAATCAGACGCGAGCCCCTCCT-----CG---GGC-----GGATTCCTCCTT 147355
Query 241 TCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCA- 299
| | | | | | || | ||||||||| |||||||| ||| | ||| || |||
Sbjct 147356 TTGCTCCTCAG-CCTACGGGGTATTAGCAGCCGTTTCCAGCTGTTGTTCCC--CTCCCAA 147412
Query 300 -GGCAGATTCCTAGGCATTACTCACCCGTCCGCCGCT 335
||||| ||| || || ||||||||||||||||| ||
Sbjct 147413 GGGCAGGTTCTTACGCGTTACTCACCCGTCCGCCACT 147449
>seq707
Length=3952773
Score = 230 bits (254), Expect = 5e-58
Identities = 258/337 (77%), Gaps = 21/337 (6%)
Strand=Plus/Plus
Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61
|| || | ||| || |||||| | | |||||||||||| || |||||||||||||||
Sbjct 462191 TTCACGACCCGTAGGCCTTCTACCTC-CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCA 462248
Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121
||| || |||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 462249 TTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGT 462308
Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181
||| |||||||||||||| |||||| ||| |||| |||||||||| ||| ||| ||||||
Sbjct 462309 GTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCAC 462368
Query 182 CAACTAGCTAATCCGAC-CTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTT 240
||||||||||||| ||| | || | | || || ||| || ||| |||
Sbjct 462369 CAACTAGCTAATCAGACGCGAGCCCCTCCT-----CG---GGC-----GGATTCCTCCTT 462415
Query 241 TCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCA- 299
| | | | | | || | ||||||||| |||||||| ||| | ||| || |||
Sbjct 462416 TTGCTCCTCAG-CCTACGGGGTATTAGCAGCCGTTTCCAGCTGTTGTTCCC--CTCCCAA 462472
Query 300 -GGCAGATTCCTAGGCATTACTCACCCGTCCGCCGCT 335
||||| ||| || || ||||||||||||||||| ||
Sbjct 462473 GGGCAGGTTCTTACGCGTTACTCACCCGTCCGCCACT 462509
>seq65
Length=1854670
Score = 212 bits (234), Expect = 1e-52
Identities = 162/189 (86%), Gaps = 2/189 (1%)
Strand=Plus/Minus
Query 10 CCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAA 69
||| || |||||| | | |||||||||||| || |||||||||||||||||| ||
Sbjct 772996 CCGTAGGCCTTCTACCTC-CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAA 772939
Query 70 TATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGA 129
||||||||||||||||||| |||||||||||| |||||||||||| | |||||| ||||
Sbjct 772938 AATTCCCCACTGCTGCCTCCTGTAGGAGTCTGGGCCGTGTCTCAGTCCAAGTGTGGCTGA 772879
Query 130 TCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGC 189
|||||||||| |||||| ||| |||| |||||||||| ||| ||| ||||||||||||||
Sbjct 772878 TCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGC 772819
Query 190 TAATCCGAC 198
||||| |||
Sbjct 772818 TAATCAGAC 772810
>seq480
Length=766732
Score = 80.6 bits (88), Expect = 6e-13
Identities = 61/71 (86%), Gaps = 1/71 (1%)
Strand=Plus/Plus
Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88
|||||||||||| || ||||||||||| |||||| || ||||||||||||||||||
Sbjct 611428 CACGCGGCATTG-CTCCGTCAGGCTTTCGACCATTGCGGAAAATTCCCCACTGCTGCCTC 611486
Query 89 CCGTAGGAGTC 99
| |||||||||
Sbjct 611487 CTGTAGGAGTC 611497
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1071935422720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |