Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq6024 255 2e-65 seq1476 190 7e-46 seq446 123 9e-26 seq41 95.1 4e-17 >seq6024 Length=163856 Score = 255 bits (282), Expect = 2e-65 Identities = 343/470 (73%), Gaps = 27/470 (6%) Strand=Plus/Minus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||| ||| || ||||||||||||||||| |||| | | ||| || |||| |||||| Sbjct 112811 GCTGCGCCTCAACGCATTTCGGGGAGAACCGGCTAGCTCTGGGTTCGAGTGGCATTTCAC 112752 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 ||||| ||||| |||||| || | | |||||| | ||| ||||||| ||||||| || Sbjct 112751 CCCTAACCACAACTCATCCGCTGATTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGT 112692 Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTG 314 | |||| |||||| |||| |||||||||||||| | ||||||| | | | | ||| Sbjct 112691 TTCACCCAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTG 112632 Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGG----GTTAA 370 || | ||||||| |||||||||||||||||||| || || |||| Sbjct 112631 ACAAT----TGCCCTATGAAGACTCGCTTTCGCTACGGCT---CCGGTGGGTTCCCTTAA 112579 Query 371 CCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGT 429 || || ||| | | | |||| |||||||||||||| |||||||| |||| | Sbjct 112578 CCAAGC--CACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCA----GA 112525 Query 430 ACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCAC 489 || ||| | |||| || | ||| || | ||||||| || ||||||||| Sbjct 112524 GCC--CCGGGCTC-----CTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCAC 112472 Query 490 TCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAA 549 |||||| ||||| ||||||||| ||||||||||||||| | |||||||||||||| | Sbjct 112471 TCCCCGATGGGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCA 112412 Query 550 GGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 ||||||||||| ||| |||||||| | |||||||||| ||| || Sbjct 112411 GGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCA 112362 Score = 255 bits (282), Expect = 2e-65 Identities = 343/470 (73%), Gaps = 27/470 (6%) Strand=Plus/Plus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||| ||| || ||||||||||||||||| |||| | | ||| || |||| |||||| Sbjct 142777 GCTGCGCCTCAACGCATTTCGGGGAGAACCGGCTAGCTCTGGGTTCGAGTGGCATTTCAC 142836 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 ||||| ||||| |||||| || | | |||||| | ||| ||||||| ||||||| || Sbjct 142837 CCCTAACCACAACTCATCCGCTGATTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGT 142896 Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTG 314 | |||| |||||| |||| |||||||||||||| | ||||||| | | | | ||| Sbjct 142897 TTCACCCAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTG 142956 Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGG----GTTAA 370 || | ||||||| |||||||||||||||||||| || || |||| Sbjct 142957 ACAAT----TGCCCTATGAAGACTCGCTTTCGCTACGGCT---CCGGTGGGTTCCCTTAA 143009 Query 371 CCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGT 429 || || ||| | | | |||| |||||||||||||| |||||||| |||| | Sbjct 143010 CCAAGC--CACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCA----GA 143063 Query 430 ACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCAC 489 || ||| | |||| || | ||| || | ||||||| || ||||||||| Sbjct 143064 GCC--CCGGGCTC-----CTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCAC 143116 Query 490 TCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAA 549 |||||| ||||| ||||||||| ||||||||||||||| | |||||||||||||| | Sbjct 143117 TCCCCGATGGGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCA 143176 Query 550 GGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 ||||||||||| ||| |||||||| | |||||||||| ||| || Sbjct 143177 GGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCA 143226 >seq1476 Length=5289327 Score = 190 bits (210), Expect = 7e-46 Identities = 305/430 (71%), Gaps = 31/430 (7%) Strand=Plus/Minus Query 168 GCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCA 227 |||| | | | ||| || |||| ||||||||||| | ||| | |||| | | | |||| Sbjct 1883215 GCTAGCTCTAGGTTCGAGTGGCATTTCACCCCTAACTACAACTTATCCGTTGATTCTTCA 1883156 Query 228 ACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAG 287 || | ||| ||||||| | ||||| || | |||| |||||| |||| ||||||||| Sbjct 1883155 ACATCAGTCGGTTCGGACTTCCACTTAGTTTCACCCAAGCTTCATCCTGGTCATGGATAG 1883096 Query 288 ATCACTTCGCTTCGGGT-CTTGATC-GTGCCACTCATACGCCCTATTCGGACTCGCTTTC 345 ||||| | ||||||| | | | | ||| || | ||||||| ||||||||||| Sbjct 1883095 ATCACCCAGGTTCGGGTTCATAAGCAGTGACAATT----GCCCTATGAAGACTCGCTTTC 1883040 Query 346 GCTACGGCTACCCCACACGGGTT-----AACCTCGCGACACAACGCAA-ACTCGCAGGCT 399 ||||||||| ||| | ||||| |||| || ||| | | | |||| |||| Sbjct 1883039 GCTACGGCT---CCA-ATGGGTTCCCTTAACCAAGC--CACTGCCTATGAGTCGCCGGCT 1882986 Query 400 CATTCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATT 459 |||||||||| |||||||| |||| | || ||| | || || | || Sbjct 1882985 CATTCTTCAACAGGCACGCGGTCA----GAGCCCG---GGCTCC------CCCACTGCTT 1882939 Query 460 GTAGGCACATGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCC 519 | || ||||||| | || ||||||||||||||| ||||| ||||||||| ||||| Sbjct 1882938 GGGAGCTTATGGTTTTATGTTCTATTTCACTCCCCGATGGGGGTTCTTTTCACCCTTCCC 1882879 Query 520 TCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGC 579 |||||||||| | |||||||||||||| || ||||||||| ||| |||||||| Sbjct 1882878 TCACGGTACTACTTCGCTATCGGTCACCCAGAAGTATTTAGCCTTGCAAGGTGGTCCTTG 1882819 Query 580 CAGATTCACA 589 |||||||| Sbjct 1882818 TTGATTCACA 1882809 >seq446 Length=3715969 Score = 123 bits (136), Expect = 9e-26 Identities = 161/220 (73%), Gaps = 6/220 (3%) Strand=Plus/Plus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||| ||| || ||||||||| ||||||| |||| | | | | || |||| |||||| Sbjct 1970706 GCTGCGCCTCAACGCATTTCGGAGAGAACCGGCTAGCTCTGGGGTCGAGTGGCATTTCAC 1970765 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 |||| ||||| |||||| || | | |||||| | ||| ||| || ||||||| || Sbjct 1970766 TCCTAATCACAGCTCATCCGCTGATTCTTCAACATCAGTCGGTGAGGACCTCCACTTAGT 1970825 Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCT-TGATC-GTG 314 | |||| |||||| |||| ||||||||||||| | |||||||| | | | ||| Sbjct 1970826 TTCACCCAAGCTTCATCCTGGTCATGGATAGATCATCCAGGATCGGGTCTATAAGCAGTG 1970885 Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCT 354 || | ||||||| ||||||||||| |||||||| Sbjct 1970886 ACAGT----TGCCCTATAAAGACTCGCTTTCACTACGGCT 1970921 >seq41 Length=2736928 Score = 95.1 bits (104), Expect = 4e-17 Identities = 78/94 (83%), Gaps = 1/94 (1%) Strand=Plus/Minus Query 471 GTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTT 530 |||||| || ||||||||||||| | ||||| ||||||||| || ||||| |||||| Sbjct 1945921 GTTTCACGTTCTATTTCACTCCCTGAT-GGGGTTCTTTTCACCCTTTCCTCATGGTACTA 1945863 Query 531 GTCCGCTATCGGTCACCAAGGAGTATTTAGGCTT 564 | |||||||||||| | |||||||||||| ||| Sbjct 1945862 CTTCGCTATCGGTCAACCAGGAGTATTTAGCCTT 1945829 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817490507776