Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq6024 217 4e-54 seq1476 190 5e-46 seq41 111 4e-22 seq446 77.0 8e-12 >seq6024 Length=163856 Score = 217 bits (240), Expect = 4e-54 Identities = 308/415 (74%), Gaps = 16/415 (4%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||||| | || |||||| ||||||||||| |||||| ||||| | Sbjct 112745 CCACAACTCAT-CCGCTGA-TTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGTT-TC 112689 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||| ||| || |||| ||| ||||||||| ||| | || |||||| || | || Sbjct 112688 ACCCAAGCTT-CATCCTGGTCAT-GGATAGATCACCCAGGTT-CGGGTCCATAAGC-AGT 112633 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTT 186 ||| | |||||| |||||||||||| ||||||| |||| | ||| |||| | Sbjct 112632 GACAATT-GCCCTATGAAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCCTTAACCAA 112575 Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGT 246 ||||||| || |||||| | | |||| | ||| ||| |||| |||| | | | Sbjct 112574 -GCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAG--AGCCCCGG 112518 Query 247 GGGC-TCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGG 305 | | |||||||||||| || |||||||||| | ||||||||||||||| | |||| Sbjct 112517 GCTCCTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCACTCCCCGATG-GGGG 112459 Query 306 TTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCC 365 |||||||| || |||||||||||||||| ||| |||||||||| ||| ||||||||||| Sbjct 112458 TTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTATTTAGCC 112399 Query 366 TTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 ||| | | |||||| | ||||| || || | ||||| || | ||||||| Sbjct 112398 TTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGCTACTCG 112344 Score = 217 bits (240), Expect = 4e-54 Identities = 308/415 (74%), Gaps = 16/415 (4%) Strand=Plus/Plus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||||| | || |||||| ||||||||||| |||||| ||||| | Sbjct 142843 CCACAACTCAT-CCGCTGA-TTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGTT-TC 142899 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||| ||| || |||| ||| ||||||||| ||| | || |||||| || | || Sbjct 142900 ACCCAAGCTT-CATCCTGGTCAT-GGATAGATCACCCAGGTT-CGGGTCCATAAGC-AGT 142955 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTT 186 ||| | |||||| |||||||||||| ||||||| |||| | ||| |||| | Sbjct 142956 GACAATT-GCCCTATGAAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCCTTAACCAA 143013 Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGT 246 ||||||| || |||||| | | |||| | ||| ||| |||| |||| | | | Sbjct 143014 -GCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAG--AGCCCCGG 143070 Query 247 GGGC-TCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGG 305 | | |||||||||||| || |||||||||| | ||||||||||||||| | |||| Sbjct 143071 GCTCCTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCACTCCCCGATG-GGGG 143129 Query 306 TTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCC 365 |||||||| || |||||||||||||||| ||| |||||||||| ||| ||||||||||| Sbjct 143130 TTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTATTTAGCC 143189 Query 366 TTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 ||| | | |||||| | ||||| || || | ||||| || | ||||||| Sbjct 143190 TTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGCTACTCG 143244 >seq1476 Length=5289327 Score = 190 bits (210), Expect = 5e-46 Identities = 265/358 (74%), Gaps = 24/358 (7%) Strand=Plus/Minus Query 29 TTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTTCAACCTGCC 88 || |||||| ||||||||||| | |||| ||||| | |||||| ||| || |||| Sbjct 1883162 TTCTTCAACATCAGTCGGTTCGGACTTCCACTTAGTT-TCACCCAAGCTT-CATCCTGGT 1883105 Query 89 CATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCGACTAGACGCCCTAGTAAGA 148 ||| ||||||||| ||| | || ||||| || | || ||| | |||||| |||| Sbjct 1883104 CAT-GGATAGATCACCCAGGTT-CGGGTTCATAAGC-AGTGACAATT-GCCCTATGAAGA 1883049 Query 149 CTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTTTGCCACTGAAAATAAGTCGC 206 |||||||| ||||||| |||| | ||| |||| | ||||||| || |||||| Sbjct 1883048 CTCGCTTT-CGCTACGGCTCCAATGGGTTCCCTTAACCAA-GCCACTGCCTATGAGTCGC 1882991 Query 207 TGACCCATTATACAAAAGGTACGCAGTCA---CCCAACAAAGTGGGCTCCC--ACTGCTT 261 | | |||| | ||| ||| |||| |||| ||| |||||||| ||||||| Sbjct 1882990 CGGCTCATTCTTCAACAGGCACGCGGTCAGAGCCC--------GGGCTCCCCCACTGCTT 1882939 Query 262 GTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCC 321 | || || ||||| | | ||||||||||||||| | |||||||||||| || |||| Sbjct 1882938 GGGAGCTTATGGTTTTATGTTCTATTTCACTCCCCGATG-GGGGTTCTTTTCACCCTTCC 1882880 Query 322 CTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCC 379 |||||||||||| ||| |||||||||| ||| |||||||||||||| | | |||||| Sbjct 1882879 CTCACGGTACTACTTCGCTATCGGTCACCCAGAAGTATTTAGCCTTGCAAGGTGGTCC 1882822 >seq41 Length=2736928 Score = 111 bits (122), Expect = 4e-22 Identities = 105/132 (80%), Gaps = 4/132 (3%) Strand=Plus/Minus Query 248 GGCTCC--CACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGG 305 |||||| ||||||||| || || |||||| | |||||||||||||| | |||| Sbjct 1945948 GGCTCCTTCACTGCTTGGGAGCTTAGAGTTTCACGTTCTATTTCACTCCCTGAT--GGGG 1945891 Query 306 TTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCC 365 |||||||| || || ||||| ||||||| ||| |||||||||| ||| ||||||||||| Sbjct 1945890 TTCTTTTCACCCTTTCCTCATGGTACTACTTCGCTATCGGTCAACCAGGAGTATTTAGCC 1945831 Query 366 TTGGAGGATGGT 377 ||| | | |||| Sbjct 1945830 TTGCAAGGTGGT 1945819 >seq446 Length=3715969 Score = 77.0 bits (84), Expect = 8e-12 Identities = 120/160 (75%), Gaps = 9/160 (6%) Strand=Plus/Plus Query 10 CACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTA 69 ||||| |||| ||||| | || |||||| ||||||| || |||||| ||||| | | Sbjct 1970773 CACAGCTCAT-CCGCTGA-TTCTTCAACATCAGTCGGTGAGGACCTCCACTTAGTT-TCA 1970829 Query 70 CCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCG 129 ||||| ||| || |||| ||| ||||||||| || | | ||||||||| | || | Sbjct 1970830 CCCAAGCTT-CATCCTGGTCAT-GGATAGATCATCCAGGAT-CGGGTCTATAAGC-AGTG 1970885 Query 130 ACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCC 169 || || |||||| ||||||||| |||| ||||| |||| Sbjct 1970886 AC-AGTTGCCCTATAAAGACTCGC-TTTCACTACGGCTCC 1970923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241525206016