Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq1930 156 5e-36 seq1868 123 3e-26 seq97 80.6 3e-13 >seq1930 Length=7350 Score = 156 bits (172), Expect = 5e-36 Identities = 131/154 (85%), Gaps = 5/154 (3%) Strand=Plus/Plus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 ||||||||||||||||||| | | ||||||||||||||||||||||||||||||||| Sbjct 3972 CTAGAAACCAACAAAATAGAACCTCT-GTCCTATTCTATTATTCCATGCTAATGTATTCG 4030 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125 || | |||||||||||||||||||||||| |||| ||||||||||||||||| | || Sbjct 4031 AGCAAAGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAAAGTCCTGGTTCCCCGACA 4090 Query 126 C-ACCAATGAA-GGCATACGGGCTCACCAAGAGG 157 | ||| |||| ||||| | ||||| || ||||| Sbjct 4091 CGCCCAGTGAAGGGCATGC-GGCTC-CCCAGAGG 4122 >seq1868 Length=2880 Score = 123 bits (136), Expect = 3e-26 Identities = 85/95 (89%), Gaps = 1/95 (1%) Strand=Plus/Minus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 ||||||||||||||||||||| || || |||||||||||||||||||||||||||| || Sbjct 1647 CTAGAAACCAACAAAATAGGGG-GCCCGCCCTATTCTATTATTCCATGCTAATGTATCCG 1589 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCA 100 || | |||||||||||||||||||||||| ||| Sbjct 1588 AGCAAAGGCCTGCTTTGAACACTCTAATTTTTTCA 1554 >seq97 Length=1410092 Score = 80.6 bits (88), Expect = 3e-13 Identities = 78/98 (80%), Gaps = 2/98 (2%) Strand=Plus/Minus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 |||||| |||||| || | |||||| | |||| |||||||||||||| | | ||||| Sbjct 399818 CCAACACAATAGGACCGAAA-TCCTATGATGTTATCCCATGCTAATGTATACAGAGCGTA 399760 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109 || |||||||| ||||||||||| |||| |||| || Sbjct 399759 GGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAG 399722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595165265616