Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq1930 279 5e-73 seq1868 181 1e-43 seq97 131 2e-28 >seq1930 Length=7350 Score = 279 bits (308), Expect = 5e-73 Identities = 178/191 (93%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 4084 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATA 4025 Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120 ||||| ||||||||||||||||||||| | ||||||||||||| |||||||||||||| Sbjct 4024 CATTAGCATGGAATAATAGAATAGGAC-AGAGGTTCTATTTTGTTGGTTTCTAGGACCG- 3967 Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180 | |||||||| |||| ||||||||||||| ||| |||||||||||||| ||||||||||| Sbjct 3966 CTGTAATGATTAATAGGGATAGTCGGGGGCGTCCGTATTCAATTGTCAGAGGTGAAATTC 3907 Query 181 TTGGATTTATT 191 ||||||||||| Sbjct 3906 TTGGATTTATT 3896 >seq1868 Length=2880 Score = 181 bits (200), Expect = 1e-43 Identities = 142/167 (85%), Gaps = 2/167 (1%) Strand=Plus/Plus Query 20 TGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACATTACCATGGAATAATAG 79 |||||||||||||| |||||||||||||||||||||| |||||||| ||||||||||||| Sbjct 1554 TGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGGATACATTAGCATGGAATAATAG 1613 Query 80 AATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAAATACGGA 139 |||||| || || ||||||||| |||||||||| | ||| |||||| |||| || Sbjct 1614 AATAGGGCGGGC-CCCCTATTTTGTTGGTTTCTAGGGGAG-CCGCAATGATTAATAGGGC 1671 Query 140 TAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186 ||| |||| |||||||||||| |||| ||||||||||||||||| Sbjct 1672 CGGTCAGGGGCATCAGTATTCAATCGTCAGAGGTGAAATTCTTGGAT 1718 >seq97 Length=1410092 Score = 131 bits (144), Expect = 2e-28 Identities = 140/181 (77%), Gaps = 3/181 (2%) Strand=Plus/Plus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| ||| Sbjct 399722 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 399781 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | |||| ||||| ||| || | ||| || ||||||| Sbjct 399782 GGGATAACATCATAGGATTT-CGGTCCTATTGTGTTGGCCTTCGGGATCGGA-GTAATGA 399839 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||| ||||||||| | ||||| || |||| |||||||||||||||||||| Sbjct 399840 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 399899 Query 190 T 190 | Sbjct 399900 T 399900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511970120960