Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq6024 273 3e-71 seq131 125 1e-26 seq241 116 6e-24 seq167 105 1e-20 seq109 73.4 6e-11 >seq6024 Length=163856 Score = 273 bits (302), Expect = 3e-71 Identities = 225/273 (82%), Gaps = 1/273 (0%) Strand=Plus/Minus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62 || ||||||| ||||||||| |||||| |||||| ||| |||| ||| |||||| Sbjct 114753 GGTGGGCTTCCTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCG 114694 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | | | |||| | ||||||| |||||||||| |||| |||||||||||||||||| Sbjct 114693 TTTACCGTGGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT 114634 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182 | ||| || ||||||||| || |||||||| |||||| ||||||||||||||| || Sbjct 114633 AGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACG 114574 Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242 |||||||||||||||||| ||| || ||||||||||||||||||||||||||||| || | Sbjct 114573 ACGTTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAACAT 114514 Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||| |||||||||| | || |||||||||||| Sbjct 114513 ACTACAGCCCCAGGTGGCGAAGAGCCGACATCG 114481 Score = 273 bits (302), Expect = 3e-71 Identities = 225/273 (82%), Gaps = 1/273 (0%) Strand=Plus/Plus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62 || ||||||| ||||||||| |||||| |||||| ||| |||| ||| |||||| Sbjct 140835 GGTGGGCTTCCTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCG 140894 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | | | |||| | ||||||| |||||||||| |||| |||||||||||||||||| Sbjct 140895 TTTACCGTGGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT 140954 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182 | ||| || ||||||||| || |||||||| |||||| ||||||||||||||| || Sbjct 140955 AGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACG 141014 Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242 |||||||||||||||||| ||| || ||||||||||||||||||||||||||||| || | Sbjct 141015 ACGTTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAACAT 141074 Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||| |||||||||| | || |||||||||||| Sbjct 141075 ACTACAGCCCCAGGTGGCGAAGAGCCGACATCG 141107 >seq131 Length=2543905 Score = 125 bits (138), Expect = 1e-26 Identities = 170/236 (72%), Gaps = 1/236 (0%) Strand=Plus/Plus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62 || || |||| |||||| || |||||| ||||| || |||| || ||||| Sbjct 1473700 GGTGGACTTCCTACTTAGAGGCTTTCAGCAGTTATCTACTCTGCACTTGGCCACCCAGTG 1473759 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | | | || | ||||||||| |||||||||| ||| || |||||||||| | Sbjct 1473760 TTTACCATGGGTACAACAACTGGTACACCAGAGGTGCATCCTTCTTTATCCTCTCGTATT 1473819 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182 ||| | | ||||||||| || ||| |||| | ||| |||||||||||||| | Sbjct 1473820 AAGTAAAAGTCCTCTCAATGCTCTAACGTCCACACCAAATATAGACCGAACTGTCTCACA 1473879 Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGG 238 |||||||||| |||||| | | | ||||| ||||||||| ||||||||||||| Sbjct 1473880 ACGTTCTGAATCCAGCTTACATACTGTTTTAACGGGCGAACAACCCAACCCTTGGG 1473935 >seq241 Length=1151104 Score = 116 bits (128), Expect = 6e-24 Identities = 120/157 (76%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 100 GTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACG 159 |||| || |||||||||| ||||| ||| || ||||||||| | |||| ||| Sbjct 388231 GTCCTTCTCGGTCCTCTCATACTAGGGAAAGGTCCTCTCAATACTGTAACGCTCACATTA 388290 Query 160 GATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGC 219 |||| |||| ||| |||||| || |||||||||||| ||| || ||| |||||| ||| Sbjct 388291 GATATGGACTGAATTGTCTCATGATGTTCTGAACCCAACTCACGAACCTTTTTAATAGGC 388350 Query 220 GAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGG 256 ||||| | ||||| |||| || || | ||||||||| Sbjct 388351 GAACAACTCAACCTTTGGAACATAGTGTAGCCCCAGG 388387 >seq167 Length=3484751 Score = 105 bits (116), Expect = 1e-20 Identities = 85/103 (83%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 88 CACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCT 147 |||||||||| |||| ||||||||||||||||||| ||| | ||||||||| || Sbjct 2993154 CACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACTAGGGAAATGTCCTCTCAATGCTCTA 2993095 Query 148 ACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTG 190 | |||||| |||||| ||||||||||||||| ||||||| || Sbjct 2993094 ATGCCCACACCGGATATGGACCGAACTGTCTCACGACGTTTTG 2993052 >seq109 Length=249040 Score = 73.4 bits (80), Expect = 6e-11 Identities = 64/80 (80%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 99 TGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGAC 158 ||| | ||||||||||||||||||| | | || ||||||||| || |||||||| | Sbjct 237556 TGTGCTTCCCGGTCCTCTCGTACTAGGAAAAGGTCCTCTCAATGCTCTAACGCCCACACC 237497 Query 159 GGATAGGGACCGAACTGTCT 178 |||| |||| ||||||||| Sbjct 237496 AGATATGGACTGAACTGTCT 237477 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780754434464