Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq6024 277 4e-72 seq707 277 4e-72 seq161 163 7e-38 seq744 82.4 2e-13 seq353 78.8 2e-12 >seq6024 Length=163856 Score = 277 bits (306), Expect = 4e-72 Identities = 306/405 (76%), Gaps = 2/405 (0%) Strand=Plus/Plus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 || ||| |||| ||||||||| |||||||||||||||||||||| ||| || ||| Sbjct 108492 TGGGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGCAAGC 108551 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124 |||||||||||| | ||||||||||| || |||||||| || ||||||| | || ||| Sbjct 108552 GTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGTCAAA 108611 Query 125 GGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCA 184 | | |||||||||| || || | |||||||| ||| |||| | | ||||||| Sbjct 108612 TCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTGCCAAGCTGGAGTACGGTAGGGGCA 108671 Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244 |||||| | ||| |||||||||||||||||| || | | |||||||| |||||| Sbjct 108672 GAGGGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGGCGAA 108731 Query 245 GGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATT 304 || |||||| | | |||||||||||| ||||||| ||||||| || ||||| Sbjct 108732 AGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCGAATGGGATT 108791 Query 305 AGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCAT-AAGTG 363 |||||||| ||||||| ||||||||||||| ||||| || | | | ||| || | Sbjct 108792 AGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTGGGCG-CTGTGCGTATCGACCC 108850 Query 364 CTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | | |||| | ||| ||||| ||||||| || ||||||||||| Sbjct 108851 GTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTA 108895 Score = 277 bits (306), Expect = 4e-72 Identities = 306/405 (76%), Gaps = 2/405 (0%) Strand=Plus/Minus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 || ||| |||| ||||||||| |||||||||||||||||||||| ||| || ||| Sbjct 147096 TGGGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGCAAGC 147037 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124 |||||||||||| | ||||||||||| || |||||||| || ||||||| | || ||| Sbjct 147036 GTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGTCAAA 146977 Query 125 GGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCA 184 | | |||||||||| || || | |||||||| ||| |||| | | ||||||| Sbjct 146976 TCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTGCCAAGCTGGAGTACGGTAGGGGCA 146917 Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244 |||||| | ||| |||||||||||||||||| || | | |||||||| |||||| Sbjct 146916 GAGGGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGGCGAA 146857 Query 245 GGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATT 304 || |||||| | | |||||||||||| ||||||| ||||||| || ||||| Sbjct 146856 AGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCGAATGGGATT 146797 Query 305 AGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCAT-AAGTG 363 |||||||| ||||||| ||||||||||||| ||||| || | | | ||| || | Sbjct 146796 AGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTGGGCG-CTGTGCGTATCGACCC 146738 Query 364 CTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | | |||| | ||| ||||| ||||||| || ||||||||||| Sbjct 146737 GTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTA 146693 >seq707 Length=3952773 Score = 277 bits (306), Expect = 4e-72 Identities = 306/405 (76%), Gaps = 2/405 (0%) Strand=Plus/Minus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 || ||| |||| ||||||||| |||||||||||||||||||||| ||| || ||| Sbjct 462156 TGGGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGCAAGC 462097 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124 |||||||||||| | ||||||||||| || |||||||| || ||||||| | || ||| Sbjct 462096 GTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGTCAAA 462037 Query 125 GGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCA 184 | | |||||||||| || || | |||||||| ||| |||| | | ||||||| Sbjct 462036 TCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTGCCAAGCTGGAGTACGGTAGGGGCA 461977 Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244 |||||| | ||| |||||||||||||||||| || | | |||||||| |||||| Sbjct 461976 GAGGGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGGCGAA 461917 Query 245 GGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATT 304 || |||||| | | |||||||||||| ||||||| ||||||| || ||||| Sbjct 461916 AGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCGAATGGGATT 461857 Query 305 AGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCAT-AAGTG 363 |||||||| ||||||| ||||||||||||| ||||| || | | | ||| || | Sbjct 461856 AGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTGGGCG-CTGTGCGTATCGACCC 461798 Query 364 CTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | | |||| | ||| ||||| ||||||| || ||||||||||| Sbjct 461797 GTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTA 461753 >seq161 Length=2288660 Score = 163 bits (180), Expect = 7e-38 Identities = 217/298 (73%), Gaps = 10/298 (3%) Strand=Plus/Minus Query 6 GAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCG 65 ||||| |||||||||||||||| |||||||||||||||||||| ||| |||||| || | Sbjct 627353 GAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCAAGTG 627294 Query 66 TTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAG 125 || | |||||| ||||||||||||||| |||||| ||| | || | ||||||| Sbjct 627293 TTCTTCGGAATGACTGGGCGTAAAGGGCACGTAGGCGGTGAATCGGGTTGAAAGTGAAAG 627234 Query 126 GCTATGGCTCAACCCCG-GGACTGCTTTTGAAAC---TGCAGGGCTAGAGTGCAGGAGGG 181 | | | || | | ||| |||||| ||||| | || || ||||| |||| Sbjct 627233 TC---GCCAAAAACTGGCGGAATGCTTTCGAAACCAATTCA---CTTGAGTGGGACAGGG 627180 Query 182 GCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGC 241 | ||||||||| | |||||| |||||||| | |||| | | |||||| ||| || Sbjct 627179 GAGAGTGGAATTTCGTGTGTAGGGGTGAAATCCAAAGATCTACGAAGGAACGCCAAAAGC 627120 Query 242 GAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACA 299 |||||| ||| |||| || ||| ||| || ||||||| |||||||| |||| Sbjct 627119 GAAGGCAGCTCTCTGGGTCCCTACCGACGCTGGGGTGCGAAAGCATGGGGAGCGAACA 627062 >seq744 Length=1071851 Score = 82.4 bits (90), Expect = 2e-13 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 || ||| |||| ||||||||| |||||||||||||||||||||| ||| || ||| Sbjct 547444 TGGGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGCAAGC 547385 Query 65 GTTATCCGGAATTACTGGGC 84 |||||||||||| | ||||| Sbjct 547384 GTTATCCGGAATGATTGGGC 547365 >seq353 Length=5262178 Score = 78.8 bits (86), Expect = 2e-12 Identities = 105/142 (74%), Gaps = 3/142 (2%) Strand=Plus/Plus Query 264 ACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCAC 323 |||||||||||| ||||||| |||||| || | ||||||||||||| |||||| Sbjct 2136996 ACTGACACTGAGAGACGAAAGCTAGGGGAGTGAATAAGATTAGATACCCTAATAGTCCTA 2137055 Query 324 GCCGTAAACGATGAATACTAGGTGTCGGGGCGCAT-AAGTGCTCCGGTGCCGCAGCAAAC 382 ||||||||| |||||||| || | | | || ||| | | | || | ||| ||| Sbjct 2137056 GCCGTAAACAATGAATAC-CGGCG-CTGTGCACATCGAACCATGCAATGTTGTAGCTAAC 2137113 Query 383 GCAATAAGTATTCCACCTGGGG 404 || ||| |||||||||||||| Sbjct 2137114 GCGTTAAATATTCCACCTGGGG 2137135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203127519232