Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq1930 544 2e-152 seq1868 417 2e-114 seq97 309 6e-82 seq54 266 6e-69 >seq1930 Length=7350 Score = 544 bits (602), Expect = 2e-152 Identities = 306/309 (99%), Gaps = 0/309 (0%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3489 GAACGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 3430 Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 139 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3429 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 3370 Query 140 GATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCG 199 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3369 GATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCG 3310 Query 200 GAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTG 259 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3309 GAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTG 3250 Query 260 CTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTG 319 ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 3249 CTCTTCAACGAGGAATGCCTAGTAAGCGCATGTCATCAGCATGCGTTGATTACGTCCCTG 3190 Query 320 CCCTTTGTA 328 ||||||||| Sbjct 3189 CCCTTTGTA 3181 >seq1868 Length=2880 Score = 417 bits (462), Expect = 2e-114 Identities = 282/311 (91%), Gaps = 6/311 (2%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || ||||||||| |||||| ||||||| |||| ||| ||| || ||||||||||| || Sbjct 2125 GAACGAGACCTTTTCCTGCTGAATAGCCCGGCCAGCTCCGGCTGGCCGCCGGCTTCTCAG 2184 Query 80 AGGGACTATCGGCTCAA-GCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTT 138 ||||||||||||||||| |||| ||||||| ||||||| |||||||||||||||||||| Sbjct 2185 AGGGACTATCGGCTCAAAGCCGTTGGAAGT--GAGGCAAAAACAGGTCTGTGATGCCCTT 2242 Query 139 AGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA-CCTTGGC 197 |||||| | |||| ||||||||||||||||||| |||||| ||||| ||| |||| || Sbjct 2243 AGATGTCCCGGGCAGCACGCGCGCTACACTGACGGAGCCAGCGAGT--ATCCTCCTTTGC 2300 Query 198 CGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTAT 257 || |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 2301 CGAAAGGCCTGGGTAATCTTGTTAAACTCCGTCGTGCTGGGGATAGAGCATTGCAATTAT 2360 Query 258 TGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCC 317 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2361 TGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCC 2420 Query 318 TGCCCTTTGTA 328 ||||||||||| Sbjct 2421 TGCCCTTTGTA 2431 >seq97 Length=1410092 Score = 309 bits (342), Expect = 6e-82 Identities = 228/263 (87%), Gaps = 2/263 (1%) Strand=Plus/Plus Query 67 GCCGGCTTCTTAGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGT 125 ||| |||||||||||||||||| | || | || | | ||||||||||||||||||||||| Sbjct 400353 GCCAGCTTCTTAGAGGGACTATGGCCTTCTAGGCCAAGGAAGTTTGAGGCAATAACAGGT 400412 Query 126 CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTT 185 ||||||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 400413 CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTC 400472 Query 186 CATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAG 245 || ||||||||| ||| | |||||||||| | ||| | ||||| |||||||||| Sbjct 400473 TATAGCCTTGGCCGACAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGAT 400531 Query 246 CATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGT 305 |||||||||| ||| ||||||||||||||| ||||||||||||| ||||||||| ||||| Sbjct 400532 CATTGCAATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGT 400591 Query 306 TGATTACGTCCCTGCCCTTTGTA 328 ||| ||||||||||||||||||| Sbjct 400592 TGACTACGTCCCTGCCCTTTGTA 400614 >seq54 Length=3626826 Score = 266 bits (294), Expect = 6e-69 Identities = 219/263 (83%), Gaps = 3/263 (1%) Strand=Plus/Plus Query 67 GCCGGCTTCTTAGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGT 125 ||| |||||||||||||||||| | || | || | | ||||||||||||||||||||||| Sbjct 1504855 GCCAGCTTCTTAGAGGGACTATGGCCTTCTAGGCCAAGGAAGTTTGAGGCAATAACAGGT 1504914 Query 126 CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTT 185 ||||||||||||||||||||||||||||||||| |||||||||| | |||| ||| Sbjct 1504915 TTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGTGCTACACTGATGTATTCAACTAGTC 1504974 Query 186 CATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAG 245 || ||||||||| ||| | |||||||||| | ||| | ||||| |||||||||| Sbjct 1504975 TATAGCCTTGGCCGAAAGACCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGAT 1505033 Query 246 CATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGT 305 |||||||||| ||| |||||||| |||||| |||||||||| || |||||||| | ||| Sbjct 1505034 CATTGCAATTGTTGGTCTTCAACAAGGAATTCCTAGTAAGCACGAGTCATCAG-TCACGT 1505092 Query 306 TGATTACGTCCCTGCCCTTTGTA 328 | |||| || ||||||||||||| Sbjct 1505093 TCATTATGTTCCTGCCCTTTGTA 1505115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947142940672