Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq6024 199 1e-48 seq392 104 8e-20 seq4 104 8e-20 seq46 80.6 9e-13 >seq6024 Length=163856 Score = 199 bits (220), Expect = 1e-48 Identities = 392/568 (69%), Gaps = 20/568 (4%) Strand=Plus/Minus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||| || |||| |||||||||||||||| ||| || ||||| | || || Sbjct 114346 TCGACGGGTGGGTCTTGCAGTCAAGCTCCCTTTTGCCTTTGCACTCGAGGGCCAATCTCC 114287 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 || | | |||| |||||||| |||||||||||| |||||||||| | || |||||| Sbjct 114286 GTCCGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTAC-GCCCCAT 114228 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCC---AGATCATGGGCCAAGGTTAGATATC 177 ||||| | ||| | |||||||| || || || || |||||||||| || Sbjct 114227 AGAAACTGTCTACCTGAGACTGTCCCTTGGCCCGTAGGTCCTGACACAAGGTTAGAATTC 114168 Query 178 CACTACGGTCAGAGTGGTATTTCAACAACGACTCC-ACAACCACTAGCGTGGCCGCATCA 236 | | ||||||||||| ||| | | ||| || || | | |||| || Sbjct 114167 TAGCTCTTCCAGAGTGGTATCTCACTGATGGCTCGGACCCCCCGGAAGGGGGCCT--TCT 114110 Query 237 TAGTCTCCCACCTATCCTACACA--AACCGCACCGAATGCCAATACCAAGCTATAGTGAA 294 | | || ||||||| || | || || || | || |||||| ||| | | |||||| Sbjct 114109 TCGCCTTCCACCTAAGCTGCGCAGGAAAGGCCC--AAAGCCAATCCCAGGGAACAGTGAA 114052 Query 295 GGTCCCG-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATT 353 | | | |||||||| |||| | || | | ||||||| || | | ||| Sbjct 114051 GCTTCATAGGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATT 113992 Query 354 TCACCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCGGAA 412 |||||| |||| | ||||||| | || |||||||||| ||||||| |||||||| Sbjct 113991 TCACCGAGCCTCTCTCCGAGACAGT-GCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAA 113933 Query 413 CTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTG 472 |||||||||||||||||||||||||||||||| ||||||||||| |||||||| || | Sbjct 113932 CTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCACCG 113873 Query 473 GGGCTTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCC 532 ||||||| | ||| ||| || || | | |||| | ||| ||||||| Sbjct 113872 GGGCTTC-GGTCGCCGGCTC-----CCCTGTCATCAGGTCACCAACTTCCTTGACCTTCC 113819 Query 533 AGCACCGGGCAGGCGTCAGTCCGTATAC 560 |||| ||||||||||||| || |||| Sbjct 113818 GGCACTGGGCAGGCGTCAGCCCCCATAC 113791 Score = 199 bits (220), Expect = 1e-48 Identities = 392/568 (69%), Gaps = 20/568 (4%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||| || |||| |||||||||||||||| ||| || ||||| | || || Sbjct 141242 TCGACGGGTGGGTCTTGCAGTCAAGCTCCCTTTTGCCTTTGCACTCGAGGGCCAATCTCC 141301 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 || | | |||| |||||||| |||||||||||| |||||||||| | || |||||| Sbjct 141302 GTCCGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTAC-GCCCCAT 141360 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCC---AGATCATGGGCCAAGGTTAGATATC 177 ||||| | ||| | |||||||| || || || || |||||||||| || Sbjct 141361 AGAAACTGTCTACCTGAGACTGTCCCTTGGCCCGTAGGTCCTGACACAAGGTTAGAATTC 141420 Query 178 CACTACGGTCAGAGTGGTATTTCAACAACGACTCC-ACAACCACTAGCGTGGCCGCATCA 236 | | ||||||||||| ||| | | ||| || || | | |||| || Sbjct 141421 TAGCTCTTCCAGAGTGGTATCTCACTGATGGCTCGGACCCCCCGGAAGGGGGCCT--TCT 141478 Query 237 TAGTCTCCCACCTATCCTACACA--AACCGCACCGAATGCCAATACCAAGCTATAGTGAA 294 | | || ||||||| || | || || || | || |||||| ||| | | |||||| Sbjct 141479 TCGCCTTCCACCTAAGCTGCGCAGGAAAGGCCC--AAAGCCAATCCCAGGGAACAGTGAA 141536 Query 295 GGTCCCG-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATT 353 | | | |||||||| |||| | || | | ||||||| || | | ||| Sbjct 141537 GCTTCATAGGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATT 141596 Query 354 TCACCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCGGAA 412 |||||| |||| | ||||||| | || |||||||||| ||||||| |||||||| Sbjct 141597 TCACCGAGCCTCTCTCCGAGACAGT-GCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAA 141655 Query 413 CTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTG 472 |||||||||||||||||||||||||||||||| ||||||||||| |||||||| || | Sbjct 141656 CTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCACCG 141715 Query 473 GGGCTTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCC 532 ||||||| | ||| ||| || || | | |||| | ||| ||||||| Sbjct 141716 GGGCTTC-GGTCGCCGGCTC-----CCCTGTCATCAGGTCACCAACTTCCTTGACCTTCC 141769 Query 533 AGCACCGGGCAGGCGTCAGTCCGTATAC 560 |||| ||||||||||||| || |||| Sbjct 141770 GGCACTGGGCAGGCGTCAGCCCCCATAC 141797 >seq392 Length=1285230 Score = 104 bits (114), Expect = 8e-20 Identities = 102/129 (79%), Gaps = 2/129 (2%) Strand=Plus/Minus Query 351 ATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCG 409 |||||||| ||||| | | |||||| | || ||||||| || || ||| ||| | Sbjct 125319 ATTTCACCAGGCCTCTCTTCGAGACAAT-GCCCAGATCGTTACACCTTTTGTGTGGGTTG 125261 Query 410 GAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTA 469 ||||||||| || ||||||||| | |||||||||| ||||||||||| | ||||||| | Sbjct 125260 CAACTTACCCAACGAGGAATTTCACCACCTTAGGATCGTTATAGTTACAATCGCCGTTCA 125201 Query 470 CTGGGGCTT 478 ||||||||| Sbjct 125200 CTGGGGCTT 125192 >seq4 Length=85910 Score = 104 bits (114), Expect = 8e-20 Identities = 116/154 (75%), Gaps = 6/154 (4%) Strand=Plus/Plus Query 397 TTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTA 456 |||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 35746 TTCGTGTGGGTCCGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACTGTTATAGTTA 35805 Query 457 CCACCGCCGTTTACTGGGGCTTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGA 516 || ||| || || |||||||| | | ||| ||| || || | | |||| | Sbjct 35806 TGACTGCCATTCACCGGGGCTTCGGTCA-CCGGCTC-----CCCTGTCATCAGGTCACCA 35859 Query 517 GTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCA 550 ||| ||||||| | || |||||||||||| Sbjct 35860 ACTTCCTTGACCTTCCGGTACTGGGCAGGCGTCA 35893 >seq46 Length=2470531 Score = 80.6 bits (88), Expect = 9e-13 Identities = 79/102 (77%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 388 GTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGG 447 |||||||| ||||||||||||| | |||||| |||||| ||||| | |||||||||| | Sbjct 2345217 GTTACGCCTTTCGTGCAGGTCGAAGCTTACCTGACAAGAAATTTTGTTACCTTAGGAATG 2345158 Query 448 TTATAGTTACCACCGCCGTTTACTGGGGCTTCAATTACCCGC 489 ||||| || | ||| || |||||||| ||| || || Sbjct 2345157 TTATAACTATGGATGTTGTTCACCGGGGCTTCGATTGCCAGC 2345116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1702297447424