Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq2779 268 2e-69 seq1851 226 5e-57 seq4321 163 5e-38 seq214 93.3 7e-17 >seq2779 Length=2288 Score = 268 bits (296), Expect = 2e-69 Identities = 214/248 (86%), Gaps = 11/248 (4%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||||| |||||| |||||||||||||||||| || |||| || ||| Sbjct 241 GTACGAGAGGAACCGCGGT-TTCAGA-TAATTGGTTTTTGCGGCTTTCCGACCGGGAAGT 184 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 183 GCCGCGACGCTACCATCTGCTGGATTACGGCTGAACGCCTCTAAGTCAGAATCCATGCCG 124 Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCG-GCCCCGAA 179 |||||||||||| || ||||||||| ||||| |||||||||||||| ||| |||||| | Sbjct 123 GAACGGGGTGATGCT-TCCTGCACACCGTAGCTGGATACGAATAGGCCTCGCGCCCCGGA 65 Query 180 CCTTAGCAGGCCGGCAACGGGCGTCCCG---CGGAAGCGCGGGGCGCTCAGCTGGCGGAT 236 || | |||||||||| | ||| |||| || || |||||||| || || ||||||| Sbjct 64 TCTCACCAGGCCGGCACC--GCGCCCCGTCTCGAAATGGCGGGGCG-TC-GCCGGCGGAT 9 Query 237 TGCAATTT 244 |||||||| Sbjct 8 TGCAATTT 1 >seq1851 Length=5936 Score = 226 bits (250), Expect = 5e-57 Identities = 152/167 (91%), Gaps = 2/167 (1%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||||| |||||| ||||||||||||||||||||| |||| |||||| Sbjct 2303 GTACGAGAGGAACCGCGGT-TTCAGA-TAATTGGTTTTTGCGGCTGTCCGACCGGGCAGT 2246 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2245 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 2186 Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGC 167 ||||||| ||| ||||| |||| | ||| |||||| |||||||| Sbjct 2185 GAACGGGACGATCCTCTCTAGCACGCCTTAGGCGGATAAGAATAGGC 2139 >seq4321 Length=265 Score = 163 bits (180), Expect = 5e-38 Identities = 178/232 (77%), Gaps = 12/232 (5%) Strand=Plus/Minus Query 51 ACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGA 110 ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 265 ACCGGGCAGTGCCGCGAAGCTACCATCTGCTGGATAATGGCTGAACGCCTCTAAGTCAGA 206 Query 111 ATCCATGCCAGAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTC 170 ||||||||||||||| | ||| | |||| |||| | || ||| ||||||||||||| Sbjct 205 ATCCATGCCAGAACGCGACGATAC-CTCCCGCACGT-ACAGATGGACACGAATAGGCTTC 148 Query 171 GGCCCCGAACCTTAGCAGGC----CGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCA 226 ||| | |||||||||| | | || | || |||||| | | | | | Sbjct 147 GGCTTAGCGTCTTAGCAGGCGATTCCTCCACTGCTCTC-----GAAGCGAGTAGTGGT-A 94 Query 227 GCTGGCGGATTGCAATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278 | ||| |||| ||||||| || | || ||| |||||||||||||||||| Sbjct 93 TTTCGCGAATTGTAATTTCAGCACGAGCGGGGTCAAATCCTTTGCAGACGAC 42 >seq214 Length=442246 Score = 93.3 bits (102), Expect = 7e-17 Identities = 96/123 (78%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||| || ||| | ||||||| | ||| || | | || |||| Sbjct 257873 GTACGAGAGGAACCATTGA-TTCTCAC-AATTGGTCATCGCGCTTGGTTAAAAAGCCAGT 257816 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | |||||||||||| ||||| ||||||||||||||||| |||| Sbjct 257815 GGCGCGAAGCTACCGTGTGCTGGATTATGACTGAATGCCTCTAAGTCAGAATCTGAGCCA 257756 Query 121 GAA 123 ||| Sbjct 257755 GAA 257753 Score = 82.4 bits (90), Expect = 1e-13 Identities = 87/112 (78%), Gaps = 2/112 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||| || ||| | | |||| || | ||| || ||| || |||| Sbjct 307618 GTACGAGAGGAACCATTGA-TTC-GCACAATTAGTCATCGCGCTTGGGTGAAAAGCCAGT 307675 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAAT 112 | | ||||| ||||| ||||||||||| |||||||||||||||||||||| Sbjct 307676 GGAGTGAAGCCACCATGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAAT 307727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819152193536