Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq1868 605 9e-171 >seq1868 Length=2880 Score = 605 bits (670), Expect = 9e-171 Identities = 366/385 (95%), Gaps = 1/385 (0%) Strand=Plus/Minus Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct 1113 TTCTCAGGCTCCCTCTCCGGAGTCGAACCCTAATTCCCCGTTACCCGTTGAAACCATGGT 1054 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1053 AGGCCTCTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 994 Query 240 TCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGG 299 ||||||| ||||||||||||||||| ||||||||||||| |||| |||| ||| |||| Sbjct 993 GCAAGGCCCTGCGATTCGTTAAGTTACCATGAATCACCAAGCAGCCTCGAAAGGCATTGG 934 Query 300 TTTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTA 359 ||||||||||||||||||||||||| |||||||||||| | |||||||||||||||| Sbjct 933 TTTTTTATCTAATAAATACACCCCTCCCGAAGTCGGGGCTCGACGCATGTATTAGCTCTA 874 Query 360 GAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATG 419 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 873 GAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATG 814 Query 420 AGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTT 479 |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| Sbjct 813 AGCCATTCGCAGTTTCACCGTATAG-TTGCTTATACTTAGACATGCATGGCTTAATCTTT 755 Query 480 GAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||| Sbjct 754 GAGACAAGCATATGACTACTGGCAG 730 Score = 255 bits (282), Expect = 2e-65 Identities = 170/188 (90%), Gaps = 1/188 (1%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| |||| || |||||| |||| |||||||||||||||||| Sbjct 1303 GTACTCATTCCAATTACCAGACTCATT-GAGCCCGGTATTGTTATTTATTGTCACTACCT 1245 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1244 CCCCGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGTGAGCCGTT 1185 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 |||||||||| |||||||||||||||||||||||| ||||||||||||| |||| |||| Sbjct 1184 TCTCAGGCTCACTCTCCGGAATCGAACCCTAATTCTCCGTTACCCGTTGCCACCACGGTA 1125 Query 181 GGCCACTA 188 ||||||| Sbjct 1124 CGCCACTA 1117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510309013504