Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq33 170 2e-37 >seq33 Length=1871104 Score = 170 bits (188), Expect = 2e-37 Identities = 551/845 (65%), Gaps = 24/845 (3%) Strand=Plus/Minus Query 61096 ATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGAC 61155 |||||||| || || || || ||||| ||||| | |||||||||||| | || |||| Sbjct 634831 ATGTACAAGAAAGCCGAGGCCTCCTTTTGGACTGCAGAGGAGGTCGATCTATCTCAAGAT 634772 Query 61156 ATGAATGACTGGGAGCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCG 61215 | | |||||| || | || ||| |||| ||||| ||||| | || Sbjct 634771 CTCCGCCAATGGGAGGCCCTAACCTCCGATGAGAAACACTTCATATCTCATGTCCTTGCC 634712 Query 61216 TTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAG 61275 ||||||||||| || || || ||||| || ||| | | ||||| | ||||| Sbjct 634711 TTCTTTGCCGCCTCTGATGGCATCGTTCTCGAAAATCTTGCCGGTCGTTTTATGAAGGAG 634652 Query 61276 GTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCAC 61335 || ||||| || ||||| ||| |||||| ||||| || || || || |||||| | ||| Sbjct 634651 GTCCAAGTCTCTGAGGCTCGTGCTTTCTATGGCTTTCAAATCGCGATTGAGAATATTCAC 634592 Query 61336 TCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA-GCGGGCG-GAACGTGAA- 61392 || |||||||| ||| || | | || || || |||| || || || ||| ||| Sbjct 634591 TCTGAGATGTATAGTCTTTTACTGGAGACTTATATCAAAGATTCGACCGAGAA---GAAT 634535 Query 61393 CGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAA--GCGGATTGGGCCT 61450 ||||| || | || |||||||| | || ||| || ||| || || ||||||| Sbjct 634534 CGATTATTTCACGCGATCGAGACCGTTCC--TTGTGTGGCTAAAAAGGCTGAGTGGGCCT 634477 Query 61451 TCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGG 61510 | | |||||| | | | ||| | || | ||| || | | || ||||| | Sbjct 634476 TGAGATGGATCGACGG---ATCGGAGTCTTTCGCTGAGAGACTTGTCGCTTTTGCATGCG 634420 Query 61511 TCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGAC 61570 | ||||| |||||||| |||| ||| ||| || |||||| | || || || || Sbjct 634419 TGGAGGGGATATTTTTCTCTGGAAGTTTTTGCGCCATATTTTGGCTAAAAAAGCGCGGGT 634360 Query 61571 TTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTG 61630 | ||||| || | || ||| || |||||||| || || |||||||| |||| || | Sbjct 634359 TGATGCCGGGATTAACTTTCTCTAACGAGTTGATCTCGCGAGACGAGGGTTTGCACTGCG 634300 Query 61631 ATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCG---GAGGAGCGTG 61687 |||| || ||||| | || | || |||| || | |||||||||| Sbjct 634299 ATTTCGCGTGCTTGCTCTACA------GTTTGTTGAAGAAGAAGTTGAATGAGGAGCGTG 634246 Query 61688 TGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGC 61747 || | || || ||||| || || || || ||| ||| | ||||| | | Sbjct 634245 TGAAGGGAATAGTGCGTGATGCAGTGGAAATTGAGAGGGAGTTTGTATGCGACGCGCTTC 634186 Query 61748 CCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCG 61807 | | | | | || ||||| | | || ||| ||||||||||| ||||| || | Sbjct 634185 CTTGCGCTTTGGTAGGGATGAACCGAGAGCTGATGAGCCAGTATATTGAGTTTGTGGCTG 634126 Query 61808 ACCGTCTGTT-GGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGAT 61866 | | |||| ||| |||||| | | ||| || ||| || ||||| |||||| Sbjct 634125 ATAGGTTGTTGGGTGCGCTTGGGTGCG-GGAAGATATACAATGTGACTAACCCTTTTGAT 634067 Query 61867 TTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGAC 61926 | ||||| |||| || || | || ||||| ||||| || || ||| | || || || Sbjct 634066 TGGATGGAGCTGATCTCATTGCAAGGAAAGACTAATTTCTTTGAAAAAAGAGTTGGTGAA 634007 Query 61927 TATCA 61931 ||||| Sbjct 634006 TATCA 634002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397538811551360