Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_031903.1 Length=172345 Score E Sequences producing significant alignments: (Bits) Value seq6024 609 3e-169 seq662 122 1e-22 seq456 111 2e-19 seq169 104 3e-17 seq84 89.7 6e-13 seq135 87.8 2e-12 >seq6024 Length=163856 Score = 609 bits (674), Expect = 3e-169 Identities = 713/961 (74%), Gaps = 2/961 (0%) Strand=Plus/Minus Query 159830 AACCGCCTCTATGTCGGTTGGTTCGGCGTCCTGATGATCCCAACTCTGTTGGCAGCAACT 159889 ||||| || || | || ||||| || || |||||||||| ||| | ||| | |||||| Sbjct 1485 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACT 1426 Query 159890 ATCTGC-TTCATCGTCGCCTTCATCGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGA 159948 |||| || || |||| ||||| ||||| || || || || || ||||| || ||||| Sbjct 1425 -TCTGTATTTATTATCGCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGA 1367 Query 159949 ACCCGTCGCTGGTTCACTCATGTACGGTAACAACATCATCTCTGGTGCAGTTGTTCCCTC 160008 ||| || |||| || || | || || ||||| || || |||||||| || |||| | Sbjct 1366 ACCTGTTTCTGGGTCTCTACTTTATGGAAACAATATTATTTCTGGTGCCATTATTCCTAC 1307 Query 160009 TTCCAACGCAATTGGTCTTCACTTCTATCCCATTTGGGAAGCCGCATCGCTCGACGAGTG 160068 ||| || || ||| | || || || || || |||||||| ||||| | || || || Sbjct 1306 TTCTGCGGCTATAGGTTTGCATTTTTACCCAATATGGGAAGCGGCATCCGTTGATGAATG 1247 Query 160069 GCTCTATAACGGTGGTCCTTTCCAACTCGTAGTCTTCCACTTCCTGATCGGCATCTATGC 160128 | | || || || ||||||| | || | || | || ||| | | || | | Sbjct 1246 GTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACATTTCTTACTTGGTGTAGCTTG 1187 Query 160129 CTATATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCCTGGATCTGTGT 160188 || |||||||||||||||||||| || |||||| |||||||| || ||||| ||| Sbjct 1186 TTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGT 1127 Query 160189 TGCATACTCTGCTCCAGTCGCTGCTGCTTCTGCTGTATTCCTCGTCTACCCCTTCGGTCA 160248 |||||| || ||||| || || |||||| ||||||| ||| | |||| || | ||||| Sbjct 1126 TGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTATCCAATTGGTCA 1067 Query 160249 GGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGCTTGT 160308 || || || |||| ||||||||| || |||||||||||||| |||| |||| |||| Sbjct 1066 AGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGT 1007 Query 160309 ATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGGGT 160368 |||||| || || ||||| ||||||||||| || || |||||| | || || ||||| || Sbjct 1006 ATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGT 947 Query 160369 ATTCGGTGGATCTCTGTTCTCTGCTATGCATGGATCTCTGGTTACTTCTAGTCTCGTCAG 160428 |||||| || || || ||| |||||||||||| || |||| || |||||| | |||| Sbjct 946 ATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAG 887 Query 160429 AGAGACGACAGAAACTGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAGGAAGAGAC 160488 || || ||||||| ||| || || | ||||||| ||||||||||||||||| || Sbjct 886 GGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAAC 827 Query 160489 TTACAACATCGTCGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCCTT 160548 ||| || ||||| || || ||||| || || || || ||||||||||||||||| || Sbjct 826 TTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTT 767 Query 160549 TAACAACTCACGCTCTCTGCACTTCTTCCTCGCTGCTTGGCCTGTTGTTGGAATCTGGTT 160608 ||||| || || ||| | || |||||| | |||||||||||||| || || || ||||| Sbjct 766 CAACAATTCTCGTTCTTTACATTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTATTTGGTT 707 Query 160609 CACTGCCCTTGGTGTTTCTACCATGGCATTCAATCTCAATGGTTTCAACTTCAACCAGTC 160668 |||||| | ||| || || ||||| ||||| || ||||||||||| |||||||| || Sbjct 706 CACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATC 647 Query 160669 CATCTTGGACAACCAAGGACAAGTTCTGAACACTTGGGCAGACGTGCTTAACCGCGCTGG 160728 | | | || | ||||| | || | || || ||||| || | ||||||| ||| Sbjct 646 CGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAA 587 Query 160729 TCTGGGCATGGAAGTCATGCACGAGCGTAACGCTCACAACTTCCCTCTCGACCTTGCTGC 160788 || || |||||||| ||||| || ||||| ||||| ||||||||||| ||||| ||||| Sbjct 586 CCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCTGC 527 Query 160789 T 160789 | Sbjct 526 T 526 Score = 571 bits (632), Expect = 6e-158 Identities = 729/997 (73%), Gaps = 13/997 (1%) Strand=Plus/Plus Query 161545 GATCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTTGCT 161604 || |||||||||||||| || ||||| || || | || ||||| || ||| | || Sbjct 37278 GACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCTTTCCTTGCGCCTATTTCGCC 37337 Query 161605 ATTGGCGGTTGGCTTACTGGCACGACTTTCGCTACGAGCTGGTATACCCATGGACTCGCT 161664 | || |||||| | || || || || || | || ||||||||||||||| | ||| Sbjct 37338 TTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACCTCATGGTATACCCATGGATTGGCT 37397 Query 161665 AGTTCCTATCTTGAGGG-TGCAAATTTTCTTACAGCGGCAGTTAGCACTCCAGCTGACGC 161723 ||||||||| | || || ||||| || | | || || |||||| ||||| ||| | Sbjct 37398 AGTTCCTATTTGGAAGGCTGCAACTTCT-TAACCGCTGCAGTTTCTACTCCTGCTAATAG 37456 Query 161724 TATGGGTCATTCTCTTCTTCTT-CTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGT 161782 | | | |||||| || || || || |||||||| || || ||||||||||| | | Sbjct 37457 TTTAGCGCATTCT-TTGTTATTACTATGGGGTCCCGAAGCACAAGGGGATTTTACTCGTT 37515 Query 161783 GGATCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACGGGGCTTTCGCTCTGATTG 161842 || ||| | || || | |||| |||||| || |||||||| ||||||| || || | Sbjct 37516 GGTGTCAATTAGGCGGTTTGTGGACTTTTGTTGCTCTCCACGGTGCTTTCGGACTAATAG 37575 Query 161843 GATTCATGCTTCGTCAGTTTGAACTTGCTCGTCTTATCGGTA----TCCGTCCTTACAAT 161898 | || ||| | ||||| |||||||||||||| ||| || | || ||||| ||| Sbjct 37576 GTTTTATGTTACGTCAATTTGAACTTGCTCG----ATCCGTGCAATTGCGACCTTATAAT 37631 Query 161899 GCTATTGCTTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTTCTCATATATCCTCTG 161958 || || || ||||||||||| |||||||||||||| || || || || ||||| || Sbjct 37632 GCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTATTCCTGATTTATCCACTA 37691 Query 161959 GGACAGTCGTCCTGGTTCTTCGCGCCATCGTTTGGGGTTGCCGCTATTTTCAGGTTCTTA 162018 || ||||| ||||| || ||||| ||||| || || ||||| || | ||| | Sbjct 37692 GGTCAGTCTGGTTGGTTTTTTGCGCCTAGTTTTGGTGTAGCAGCTATATTTCGATTCATC 37751 Query 162019 CTTTTCCTACAAGGTTTCCACAATTGGACGCTTAATCCGTTCCACATGATGGGTGTCGCA 162078 || || | ||||| || || || |||||||| || || || || |||||||| || || Sbjct 37752 CTCTTTTTCCAAGGGTTTCATAACTGGACGCTGAACCCATTTCATATGATGGGGGTTGCC 37811 Query 162079 GGTATCTTGGGTGGTGCTTTGCTCTCTGCTATTCACGGTGTGACTGTTGAAAACACGCTC 162138 || | || |||| |||| |||| | |||||||| |||| ||||| ||||| || | Sbjct 37812 GGCGTATTAGGTGCTGCTCTGCTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTA 37871 Query 162139 TACCAAGATGGTGAACAAGCAAATACTTTCAAGGCTTTTGACTCTACGCAAGAGGAGGAG 162198 | |||||||||| |||||||| ||| |||||| || | || |||| || || Sbjct 37872 TTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAA 37931 Query 162199 ACTTACTCGATGGTTACTGCGAACCGTTTCTGGTCACAGATCTTCGGTATTGCTTTTAGT 162258 ||||| || |||||||| || ||||| || ||||| || ||||| || |||||||| Sbjct 37932 ACTTATTCAATGGTTACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCC 37991 Query 162259 AATAAGCGTTGGTTGCATTTCTTTATGCTCTTCGTTCCCGTCATGGGTCTCTGGACAAGT 162318 ||||| |||||||| |||||||||||| | || || || || | ||| | |||| ||| Sbjct 37992 AATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGT 38051 Query 162319 TCTATCGGTATTATTGGACTCGCTCTTAATCTTCGTGCTTACGACTTTGTATCTCAGGAG 162378 || | || | | || || ||||| ||||| ||||| || ||||| || ||||||||| Sbjct 38052 GCTCTTGGAGTAGTCGGTCTGGCTCTGAATCTACGTGCCTATGACTTCGTTTCTCAGGAG 38111 Query 162379 ATTCGTGCAGCGGAGGATCCTGAATTTGAAACCTTCTACACCAAGAATATCCTCTTGAAT 162438 || ||||||||||| |||||||||||||| || |||||||| || ||||| ||||| || Sbjct 38112 ATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACTAAAAATATTCTCTTAAAC 38171 Query 162439 GAAGGTCTTCGTGCATGGTTGGCACCAGTTGATCAACCGCATGAGAACTTTGTATTCCCT 162498 |||||| ||||||| ||| |||| | ||||| || ||||| ||| || |||||||| Sbjct 38172 GAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCT 38231 Query 162499 GAGGAAGTTCTGCCTAGAGGTAACGCACTGTGAATGG 162535 ||||| ||||| || | || ||||| || | ||||| Sbjct 38232 GAGGAGGTTCTACCACGTGGAAACGCTCT-TTAATGG 38267 >seq662 Length=431101 Score = 122 bits (134), Expect = 1e-22 Identities = 144/195 (74%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 160960 GATGATCAATATGTCCTTGACGCTGCTGATGAAGCAGGTGTTGACGGACCCTACTCCTGT 161019 |||||| ||| |||| || |||||||| ||||| || ||||| ||||| || || Sbjct 315080 GATGATACATACATCCTAGATGCTGCTGAGGAAGCTGGAGTTGAGCTTCCCTATTCTTGC 315139 Query 161020 CGTGCTGGTGCTTGCTCTACTTGTGCTGGTAAGATTGAGAGTGGTACTGTAGATCAATCT 161079 | ||||| |||||||||||||||||||| ||||| | | ||| | |||||||| ||| Sbjct 315140 AGGGCTGGGGCTTGCTCTACTTGTGCTGGGAAGATGGTGTCAGGTTCGGTAGATCAGTCT 315199 Query 161080 GATCAATCTTTCCTGGATGATGATCAACTTGAATCAGGATTTGTCCTGACCTGCGTTGCT 161139 ||| || ||||||||||| ||||| | || || | | | ||||| || ||| | Sbjct 315200 GATGGTTCGTTCCTGGATGAGAATCAAATGAAAGACGGTTATTTGCTGACTTGTGTTTCA 315259 Query 161140 TATCCCACTTCTGAT 161154 || || ||||| ||| Sbjct 315260 TACCCAACTTCAGAT 315274 >seq456 Length=400266 Score = 111 bits (122), Expect = 2e-19 Identities = 263/389 (68%), Gaps = 10/389 (3%) Strand=Plus/Minus Query 162052 AATCCGTTCCACATGATGGGTGTCGCAGGTATCTTGGGTGGTGCTTTGCTCTC---TGC- 162107 || || || || |||| ||| || || || || ||| | | || |||||| ||| Sbjct 321004 AACCCATTTCATATGACGGGAGTTGCCGGCATATTGTATTGGGCACTGCTCTGCTATGCA 320945 Query 162108 -TATTCACGGTGTGACTGTTGAAAACACGCTCTACCAAGATGGTGAACAAGCAAATACTT 162166 |||||| |||| | ||| ||||| || | | |||||||||| | ||| |||| Sbjct 320944 CTATTCATAGTGTTATTGTAGAAAAGACTTTATCTGAAGATGGTGATGGTGTAAACACTT 320885 Query 162167 TCAAGGCTTTTGACTCTACGCAAGAGGAGGAGACTTACTCGATGGTTACTGCGAACCGTT 162226 | | | ||| | | || ||| || || ||||| || | || ||||| |||| | Sbjct 320884 TGCATACCTTTAAACCAACTCAATCTGAAGAAACTTATTCAGTCGTCACTGCCAACCACT 320825 Query 162227 TCTGGTCACAGATCTTCGGTATTGCTTTTAGTAATAAGCGTTGGTTGCATTTCTTTATGC 162286 | ||||| || ||||| || ||||||||| |||||| |||| || ||||||||||| Sbjct 320824 TTTGGTCTCAAATCTTTGG-ATTGCTTTTTCTAATAAATGTTGATTATATTTCTTTATGT 320766 Query 162287 TCTTCGTTCCCGTCATGGGTCTCTGGACAAGTTCTATCGGTATTATTGGACTCG-CTCTT 162345 | | | || || || | | | | || ||| || | | | || | || | | || | Sbjct 320765 TATCTATACCAGTAATCGATTTATAGATGAGTGCTCTTAG-AATAGTCGATTTGACTTTC 320707 Query 162346 AATCTTCGTGCTTACGACTTTGTATCTCAGGAGATTCGTGCAGCGGAGGATCCTGAATTT 162405 ||||| |||| || ||||||| ||||| || | || || ||| |||||||| || Sbjct 320706 AATCTATGTGCCTATGACTTTGCTTCTCAAGA-AATCTATAAGAGGAAAATCCTGAA-TT 320649 Query 162406 GAAACCTTCTACACCAAGAATATCCTCTT 162434 | || |||||||| || ||||| ||||| Sbjct 320648 CAGACTTTCTACACTAAAAATATTCTCTT 320620 >seq169 Length=810068 Score = 104 bits (114), Expect = 3e-17 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 160975 CTTGACGCTGCTGATGAAGCAGGTGTTGACGGACCCTACTCCTGTCGTGCTGGTGCTTGC 161034 || || || ||||| |||||||| |||||| || ||||| ||| | || ||| ||||| Sbjct 97428 CTGGATGCAGCTGAAGAAGCAGGAGTTGACTTGCCATACTCATGTAGGGCAGGTTCTTGC 97369 Query 161035 TCTACTTGTGCTGGTAAGATTGAGAGTGGTACTGTAGATCAATCTGATCAATCTTTCCTG 161094 ||| ||||||| || || ||| | || || ||||| || ||| ||| || Sbjct 97368 TCTTCTTGTGCAGGGAAAGTTGTAGGAGGAGAGGTTGATCAGTCCGATGGTAGTTTTCTT 97309 Query 161095 GATGATGATCAACTTGAATCAGGATTTGTCCTGACCTGCGTTGCTTATCCCACTTCTGAT 161154 |||||||| ||| | ||| || | || || || || ||||||||||||||||||||| Sbjct 97308 GATGATGAACAAATGGAAGAGGGCTGGGTTCTTACTTGTGTTGCTTATCCCACTTCTGAT 97249 Query 161155 GT 161156 || Sbjct 97248 GT 97247 >seq84 Length=594450 Score = 89.7 bits (98), Expect = 6e-13 Identities = 165/238 (69%), Gaps = 8/238 (3%) Strand=Plus/Minus Query 160960 GATGATCAATATGTCCTTGACGCTGCTGATGAAGCAGGTGTTGACGGACCCTACTCCTGT 161019 |||||| || |||||||| ||||||| | ||||| | || || ||||| ||| Sbjct 371803 GATGATACTTACATCCTTGACTCTGCTGAAAATGCAGGAATAGAACTGCCTTACTCATGT 371744 Query 161020 CGTGCTGGTGCTTGCTCTACTTGTGCTGGTAAGATTGAGAGTGGTACTGTAGATCAATCT 161079 | || || || ||||||||||||||||| || | | ||| ||||||| ||||| Sbjct 371743 AGGGCAGGGGCCTGCTCTACTTGTGCTGGGCAGCTGGTTTCTGGATCTGTAGACCAATCA 371684 Query 161080 GATCAATCTTTCCTGGATGATGATCAACTTGAATCAGGATTTGTCCTGACCTGCGTTGCT 161139 ||| || |||||| || || ||| | || ||||| ||| || ||||| || | Sbjct 371683 GATGGGTCATTCCTGAGCGAAGAGCAAATGGAGAAAGGATATGTACTTACCTGTGTCTCA 371624 Query 161140 TATCCCACTTCTGA---TGTAACTATTCTTGCCGAGCAAGAAGAGT-CTCTTTACTAA 161193 ||||| ||||| || ||| ||||| | | | |||| ||||| ||| |||||| Sbjct 371623 TATCCAACTTCAGACTCTGT---TATTCGTACTCA-CAAGGAGAGTGATCTCTACTAA 371570 >seq135 Length=947859 Score = 87.8 bits (96), Expect = 2e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 160256 TTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGCTTGTATTCCAA 160315 || || |||| ||||||| | || ||||| ||||||| |||| |||| ||||||||||| Sbjct 378311 TTTTCTGATGGTATGCCTATAGGAATCTCCAGTACTTTCAACTTTATGATTGTATTCCAA 378252 Query 160316 GCAGAACACAATATCCTTATGCATCCGTTCCACATG 160351 || || || || ||||||||||| || || ||||| Sbjct 378251 GCTGAGCAGAACATCCTTATGCACCCATTTTACATG 378216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 551334481387200