Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_031906.1 Length=198190 Score E Sequences producing significant alignments: (Bits) Value seq6024 589 3e-163 seq456 159 4e-34 seq214 102 1e-16 >seq6024 Length=163856 Score = 589 bits (652), Expect = 3e-163 Identities = 730/991 (74%), Gaps = 10/991 (1%) Strand=Plus/Minus Query 188851 TTCTGCGAATGGGTCACCTCTACTAACAACCGTCTGTATGTCGGTTGGTTCGGTGTCCTG 188910 ||||| | ||| | ||| ||| | |||||||| || | || ||||| ||||| || Sbjct 1512 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1453 Query 188911 ATGATCCCTACGCTTCTCGCTGCAACCATCTGC-TTCATCGTCGCCTTTGTCGCTGCACC 188969 ||||||||||| | | | ||||| |||| || || |||| || | |||||||| Sbjct 1452 ATGATCCCTACTTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTCATTGCTGCACC 1394 Query 188970 CCCTGTAGACATTGATGGCATCCGCGAACCCGTCGCTGGTTCACTCATGTATGGAAACAA 189029 || ||||| |||||||| || || ||||| || |||| || || | ||||||||||| Sbjct 1393 TCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGGTCTCTACTTTATGGAAACAA 1334 Query 189030 CATCATCTCTGGTGCTGTTGTCCCTTCATCCAACGCAATTGGTCTTCACTTCTACCCCAT 189089 || || |||||||| || | ||| | || || || ||| | || || ||||| || Sbjct 1333 TATTATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTACCCAAT 1274 Query 189090 CTGGGAAGCCGCCTCACTCGATGAGTGGCTCTACAACGGTGGTCCTTTCCAACTGGTAGT 189149 |||||||| || || | ||||| ||| | ||||| || ||||||| | || | || Sbjct 1273 ATGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGT 1214 Query 189150 CTTCCACTTCCTCATCGGCATCTACGCCT---ACATGGGTCGTGAGTGGGAACTCTCTTA 189206 | || ||| | | || | || || | |||||||||||||||||||||| || Sbjct 1213 TCTACATTTCTTACTTGG--TGTA-GCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTT 1157 Query 189207 CCGTCTCGGTATGCGTCCTTGGATCTGCA-TTGCTTACTCTGCACCTGTTGCAGCAGCAT 189265 |||||| |||||||| |||||||| ||| |||| || || || ||||||||||| || Sbjct 1156 CCGTCTGGGTATGCGCCCTTGGAT-TGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTA 1098 Query 189266 CCGCAGTCTTTCTGGTCTATCCTTTTGGTCAAGGTTCTTTCTCTGACGCAATGCCCTTGG 189325 | || || || || ||||||| |||||||||| || ||||| | ||||| | | Sbjct 1097 CTGCTGTTTTCTTGATCTATCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAG 1038 Query 189326 GTATCAGTGGAACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGC 189385 | ||| ||| || ||||||| ||| |||| ||||| || |||||||||||||| |||| Sbjct 1037 GAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGC 978 Query 189386 ACCCCTTCCACATGCTGGGAGTCGCAGGTGTCTTCGGTGGTTCACTGTTCTCCGCAATGC 189445 |||| || |||||| | || || || ||||| ||||| ||||| || ||| || |||| Sbjct 977 ACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGC 918 Query 189446 ATGGTTCACTCGTTACCTCTTCACTGGTTCGTGAAACCACTGAAACCGAGTCCCAGAACT 189505 ||||||| | || |||||| || | | |||||||| |||| || || || Sbjct 917 ATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATG 858 Query 189506 ATGGTTACAAGTTTGGACAAGAAGAAGAAACGTACAACATCGTTGCTGCTCATGGATATT 189565 | ||||||| || || ||||| |||||||| || || ||||| || |||||||| |||| Sbjct 857 AAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATT 798 Query 189566 TCGGTCGTCTTATCTTCCAATATGCATCGTTCAACAACTCCCGTTCACTTCACTTCTTCC 189625 | || || | |||||||||||||| |||||||| || ||||| | || |||||| Sbjct 797 TTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCT 738 Query 189626 TCGCTGCCTGGCCAGTCGTGGGTATCTGGTTTACCGCCCTCGGCGTCAGCACCATGGCAT 189685 | ||||| ||||| || || ||||| ||||| || || | || | ||||| ||||| | Sbjct 737 TAGCTGCTTGGCCTGTAGTAGGTATTTGGTTCACTGCTTTAGGTATTAGCACTATGGCTT 678 Query 189686 TCAACCTCAATGGGTTCAACTTCAATCAATCCATTCTTGATGGTCAAGGTCGTGTTCTGA 189745 ||||||| ||||| ||||| ||||| |||||| | ||||| ||||||||||||| | | Sbjct 677 TCAACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGATAGTCAAGGTCGTGTAATTA 618 Query 189746 ACACATGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGCATGAGCGTA 189805 | || ||||| || || | ||||||||| |||||||||||||| |||||||| |||| Sbjct 617 ATACCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTA 558 Query 189806 ACGCTCACAACTTCCCTCTTGATCTGGCAGC 189836 | ||||| ||||||||||| || || || || Sbjct 557 ATGCTCATAACTTCCCTCTAGACCTAGCTGC 527 Score = 502 bits (556), Expect = 3e-137 Identities = 724/1018 (71%), Gaps = 10/1018 (1%) Strand=Plus/Plus Query 189987 TTTGACATCCTTGATGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGGTCTGGA 190046 ||||| || | ||||||||| | | || || || || ||||| |||||||| || Sbjct 37248 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGT 37307 Query 190047 TTACTTCTTTTTCCCACTGCTTATCTCGCAATTGGTGGCTGGCTTACTGGCACGACGTTT 190106 || | || ||||| || ||| |||| | || || ||| | || || || || ||| Sbjct 37308 CTATTGCTCTTTCCTTGCGCCTATTTCGCCTTAGGGGGTTGGTTCACAGGTACAACCTTT 37367 Query 190107 GCTACAAGCTGGTACACCCACGGACTCGCAAGTAGTTACCTTGAGGG-TGCTAATTTTCT 190165 | || ||||| ||||| ||| | || ||| || | || || ||| | || | | Sbjct 37368 GTAACCTCATGGTATACCCATGGATTGGCTAGTTCCTATTTGGAAGGCTGCAACTTCT-T 37426 Query 190166 TACAGCGGCTGTGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGG 190225 || || || || || || |||||| || | | | |||||| | | |||| ||||| Sbjct 37427 AACCGCTGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTATTACTATGGGG 37486 Query 190226 TCCTGAATCTCAAGGCGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGCTTTTGT 190285 ||| ||| | ||||| ||||| | ||| ||| | || || | ||| ||||||| Sbjct 37487 TCCCGAAGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGCGGTTTGTGGACTTTTGT 37546 Query 190286 GGCGCTCCACGGGGCTTTCGCTCTAATTGGATTCATGCTTCGTCAGTTTGAACTGGCACG 190345 || |||||||| ||||||| ||||| || || ||| | ||||| |||||||| || || Sbjct 37547 TGCTCTCCACGGTGCTTTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCG 37606 Query 190346 TCTCATCGGTA----TCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTT 190401 ||| || | || ||||| ||||| || || ||||||||||| || ||||||| Sbjct 37607 ----ATCCGTGCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTT 37662 Query 190402 TTGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTCTTCGCGCCATCCT 190461 ||||| || || || || || || || ||||| || ||||||| || ||||| | Sbjct 37663 TTGTTTCTGTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTTTTTGCGCCTAGTT 37722 Query 190462 TCGGTGTGGCAGCGATCTTCCGCTTCCTCCTCTTCTTGCAGGGCTTCCATAACTGGACGC 190521 | ||||| ||||| || || || ||| ||||||| || || || || ||||||||||||| Sbjct 37723 TTGGTGTAGCAGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAACTGGACGC 37782 Query 190522 TGAACCCCTTCCACATGATGGGTGTTGCAGGTATCCTGGGAGGAGCACTACTGTCAGCAA 190581 ||||||| || || |||||||| ||||| || | | || | || || || | || | Sbjct 37783 TGAACCCATTTCATATGATGGGGGTTGCCGGCGTATTAGGTGCTGCTCTGCTATGCGCTA 37842 Query 190582 TCCATGGTGTGACTGTAGAGAATACTTTGTATGAAGATGGTGAACAAGCAAACACGTTTA 190641 | ||||||| |||||||| |||||||| | |||||||||||| ||||| || || Sbjct 37843 TTCATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCC 37902 Query 190642 AAGCATTCGACTCTACACAAGAGGAAGAGACCTATTCGATGGTCACTGCCAACCGTTTCT 190701 || || || | || |||| ||||| || ||||| ||||| || || ||||| || | Sbjct 37903 GTGCTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTTACCGCTAACCGCTTTT 37962 Query 190702 GGTCTCAAATCTTTGGTGTTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTCT 190761 |||| ||||||||||| ||||| || ||||| | ||||| |||||||||||| | | Sbjct 37963 GGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTAT 38022 Query 190762 TTGTTCCTGTTATGGGTCTGTGGACTTCTTCCATCGGTATTATTGGTCTTGCTCTCAACC 190821 |||| || || | ||| | |||| | | | || | | ||||| ||||| || | Sbjct 38023 TTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTGGCTCTGAATC 38082 Query 190822 TTCGTGCTTATGACTTTGTATCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTCGAGA 190881 | ||||| |||||||| || || || |||||| | ||||| |||||||| || || |||| Sbjct 38083 TACGTGCCTATGACTTCGTTTCTCAGGAGATCCGTGCAGCGGAAGATCCTGAATTTGAGA 38142 Query 190882 CTTTTTACACAAAAAATATACTTTTGAATGAAGGTCTTCGTTCATGGTTGGCACCTGTTG 190941 |||| ||||| |||||||| || || || |||||| ||||| | ||| |||| || | Sbjct 38143 CTTTCTACACTAAAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAG 38202 Query 190942 ATCAACCCCATGAGAATTTTGTATTTCCAGAAGAAGTATTGCCAAGAGGCAACGCTCT 190999 |||| || ||||| || || |||| || || || || | ||| | || |||||||| Sbjct 38203 ATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 38260 >seq456 Length=400266 Score = 159 bits (176), Expect = 4e-34 Identities = 311/454 (69%), Gaps = 8/454 (2%) Strand=Plus/Minus Query 190458 TCCTTCGGTGTGGCAGCGATCTTCCGCTTCCTCCTCTTCTTGCAGGGCTTCCATAACTGG 190517 ||||| |||| ||| | || || || ||| || |||| || || | || |||||| | Sbjct 321070 TCCTTTTGTGTAGCAACTATATTTCGATTCATCTTCTTTTTCCAAGAGTTTTATAACTAG 321011 Query 190518 ACGCTGAACCCCTTCCACATGATGGGTGTTGCAGGTATCCTGGGAGGAGCACTACTGTCA 190577 | | ||||||| || || |||| ||| ||||| || || || | ||||| || | Sbjct 321010 ATGTTGAACCCATTTCATATGACGGGAGTTGCCGGCATATTGTATTGGGCACTGCTCTGC 320951 Query 190578 ---GCA--ATCCATGGTGTGACTGTAGAGAATACTTTGTATGAAGATGGTGAACAAGCAA 190632 ||| || ||| |||| | |||||| || ||||| | |||||||||||| | || Sbjct 320950 TATGCACTATTCATAGTGTTATTGTAGAAAAGACTTTATCTGAAGATGGTGATGGTGTAA 320891 Query 190633 ACACGTTTAAAGCATTCGACTCTACACAAGAGGAAGAGACCTATTCGATGGTCACTGCCA 190692 |||| || | | || | | || ||| ||||| || ||||| | |||||||||| Sbjct 320890 ACACTTTGCATACCTTTAAACCAACTCAATCTGAAGAAACTTATTCAGTCGTCACTGCCA 320831 Query 190693 ACCGTTTCTGGTCTCAAATCTTTGGTGTTGCGTTCAGTAATAAGAGGTGGTTGCATTTCT 190752 ||| || ||||||||||||||||| |||| || |||||| | || || |||||| Sbjct 320830 ACCACTTTTGGTCTCAAATCTTTGG-ATTGCTTTTTCTAATAAATGTTGATTATATTTCT 320772 Query 190753 TTATGCTCTTTGTTCCTGTTATGGGTCTGTGGACTTCTTCCATCGGTATTATTGGTCTTG 190812 ||||| | | | | || || || | | | | || | | | | || | | | | Sbjct 320771 TTATGTTATCTATACCAGTAATCGATTTATAGATGAGTGCTCTTAGAATAGTCGATTTGA 320712 Query 190813 CTCTCAACCTTCGTGCTTATGACTTTGTATCCCAAGAGATCAGAGCAGCAGAAGATCCAG 190872 || |||| || |||| |||||||||| || ||||| ||| | || ||| |||| | Sbjct 320711 CTTTCAATCTATGTGCCTATGACTTTGCTTCTCAAGAAATC-TATAAGAGGAAAATCCTG 320653 Query 190873 AGTTCGAGACTTTTTACACAAAAAATATACTTTT 190906 | ||| ||||||| ||||| |||||||| || || Sbjct 320652 AATTC-AGACTTTCTACACTAAAAATATTCTCTT 320620 >seq214 Length=442246 Score = 102 bits (112), Expect = 1e-16 Identities = 145/199 (73%), Gaps = 9/199 (5%) Strand=Plus/Plus Query 190413 TTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTCTTCGCGCCATCCTTCGGTGTGGCA 190472 || || || || ||||||||||| || ||||||| || |||||| || ||||| ||| Sbjct 75047 TTCCTGATTTATCCTCTGGGTCAGTCTGGTTGGTTTTTTGCGCCA-GTTTTGGTGTAGCA 75105 Query 190473 GCGATCTTCCGCTTCCTCCTCTTCTTGCAGGGCTTCCATAACTGGACGCTGAACCCCTTC 190532 || || || || ||| ||||||| || || || || |||||| ||||||||| || Sbjct 75106 GCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTAATAACT----GCTGAACCCATTT 75161 Query 190533 CACATGATGGGTGTTG-CAG-GTATCCTGGGAGGAGCACTACTGTCAGCAATCCATGGTG 190590 || || ||||| |||| ||| |||| | || | || || | || || ||||||| Sbjct 75162 CATATCATGGGGGTTGCCAGCGTAT--TAGGTGCTGCTCTGTAATGCGCTATTCATGGTG 75219 Query 190591 TGACTGTAGAGAATACTTT 190609 |||||||| |||||||| Sbjct 75220 GTACTGTAGAAAATACTTT 75238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634032253776000