Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_031922.1 Length=174830 Score E Sequences producing significant alignments: (Bits) Value seq6024 697 0.0 seq456 174 2e-38 seq214 118 1e-21 seq102 105 7e-18 seq823 104 3e-17 seq135 93.3 5e-14 >seq6024 Length=163856 Score = 697 bits (772), Expect = 0.0 Identities = 735/962 (76%), Gaps = 4/962 (0%) Strand=Plus/Minus Query 160599 AATCGTCTTTACGTCGGTTGGTTCGGTGTGCTGATGATCCCAACTCTGTTGGCAGCAACC 160658 || ||||||||| | || ||||| ||||| |||||||||| ||| | ||| | ||||| Sbjct 1485 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACT 1426 Query 160659 GTCTGC-TTTATTACTGCGTTCGTTGCTGCTCCCCCCGTGGACATCGACGGTATCCGTGA 160717 |||| ||||||| || ||| ||||||| || || || || || || ||||| ||||| Sbjct 1425 -TCTGTATTTATTATCGCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGA 1367 Query 160718 ACCCGTTGCTGGTTCACTGATGTATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTTC 160777 ||| ||| |||| || || | ||||||||||| || || |||||||| || ||||| | Sbjct 1366 ACCTGTTTCTGGGTCTCTACTTTATGGAAACAATATTATTTCTGGTGCCATTATTCCTAC 1307 Query 160778 TTCCAACGCAATTGGTCTTCACTTCTACCCCATTTGGGAAGCTGCATCTCTTGATGAATG 160837 ||| || || ||| | || || ||||| || |||||||| ||||| |||||||||| Sbjct 1306 TTCTGCGGCTATAGGTTTGCATTTTTACCCAATATGGGAAGCGGCATCCGTTGATGAATG 1247 Query 160838 GCTCTACAATGGTGGTCCTTACCAACTGGTCGTATTTCACTTCCTGATCGGCATCTTCTG 160897 | | |||||||| |||||||| | || | || | || ||| | | || | || Sbjct 1246 GTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACATTTCTTACTTGGTGTAGCTTG 1187 Query 160898 CTACATGGGTCGCGAGTGGGAACTTTCCTACCGCCTCGGCATGCGCCCCTGGATCTGC-G 160956 ||||||||||| |||||||||||| | ||| || || |||||||| ||||| ||| | Sbjct 1186 TTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGAT-TGCTG 1128 Query 160957 TTGCATATTCTGCACCTGTTGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGGTC 161016 |||||||||| || |||||||| ||||| | ||| || ||| | ||||||| | |||| Sbjct 1127 TTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTATCCAATTGGTC 1068 Query 161017 AAGGTTCTTTCTCTGATGGTATGCCCCTGGGTATCTCTGGTACCTTCAACTTCATGCTTG 161076 |||| || |||||||||||||| || || ||||||||||| |||||||| ||| ||| Sbjct 1067 AAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTG 1008 Query 161077 TCTTCCAGGCAGAACACAACATCCTGATGCACCCCTTCCACATGTTGGGTGTTGCTGGTG 161136 | |||||||| || ||||||||||| |||||||| || |||||||| || || ||||||| Sbjct 1007 TATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTG 948 Query 161137 TCTTCGGTGGTTCTCTGTTCTCCGCAATGCATGGTTCACTGGTTACTTCTTCCCTGGTTC 161196 | ||||| ||||| || ||| || ||||||||||| |||| || ||| || | Sbjct 947 TATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCA 888 Query 161197 GTGAAACCACTGAGAACGAGTCCCAGAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGA 161256 | |||||||| || || || || || | ||||||| || |||||||| ||||| | Sbjct 887 GGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAA 828 Query 161257 CCTACAACATCGTCGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCT 161316 | || || ||||| || ||||||||||| || || || ||||||||||||| ||| | Sbjct 827 CTTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTT 768 Query 161317 TCAACAACTCCCGTTCGTTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGT 161376 ||||||| || ||||| || || |||||| | || || |||||||| || ||||| |||| Sbjct 767 TCAACAATTCTCGTTCTTTACATTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTATTTGGT 708 Query 161377 TCACTGCACTTGGTGTCTCCACCATGGCATTCAACCTGAACGGATTCAACTTCAACCAGT 161436 ||||||| | ||| | ||| ||||| |||||||| || || ||||| |||||||| | Sbjct 707 TCACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAAT 648 Query 161437 CCATCATGGATGGTCAGGGCAAAGTCCTGAACACCTGGGCTGACGTTCTGAATCGTGCTA 161496 || | | ||| |||| || || | || ||||||||||| || | || ||||||| Sbjct 647 CCGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTA 588 Query 161497 ACCTTGGTATGGAAGTAATGCACGAGCGTAATGCTCACAACTTCCCTCTGGATCTCGCTG 161556 |||||||||||||||| ||||| || ||||||||||| ||||||||||| || || |||| Sbjct 587 ACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCTG 528 Query 161557 CT 161558 || Sbjct 527 CT 526 Score = 551 bits (610), Expect = 6e-152 Identities = 719/991 (73%), Gaps = 8/991 (1%) Strand=Plus/Plus Query 163917 GATCGCTTTGTCTTTGTGGGTTGGTCTGGATTACTTCTTTTTCCCACTGCTTATCTTGCA 163976 || || || || ||||| |||||||| || || | || ||||| || ||| | || Sbjct 37278 GACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCTTTCCTTGCGCCTATTTCGCC 37337 Query 163977 ATTGGTGGCTGGCTTACTGGTACAACGTTTGTTACCAGTTGGTACACCCACGGTCTCGCG 164036 | || || ||| | || |||||||| ||||| ||| ||||| ||||| || | || Sbjct 37338 TTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACCTCATGGTATACCCATGGATTGGC- 37396 Query 164037 TCTAGTTACC--TTG--AGGGTGCTAATTTCCTTACAGCGGCTGTGTCAACGCCTGCTGA 164092 ||||| | ||| ||| ||| || ||| | || || || || || || |||||| | Sbjct 37397 --TAGTTCCTATTTGGAAGGCTGC-AACTTCTTAACCGCTGCAGTTTCTACTCCTGCTAA 37453 Query 164093 TGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGGACTTCATTAG 164152 | | | | |||||| | | |||| |||||||| || | || ||||| || | | | Sbjct 37454 TAGTTTAGCGCATTCTTTGTTATTACTATGGGGTCCCGAAGCACAAGGGGATTTTACTCG 37513 Query 164153 GTGGTGCCAACTTGGGGGACTCTGGGCTTTTGTGGCGTTCCACGGATCTTTCGCTCTGAT 164212 ||||| ||| | || || | ||| ||||||| || ||||||| |||||| || || Sbjct 37514 TTGGTGTCAATTAGGCGGTTTGTGGACTTTTGTTGCTCTCCACGGTGCTTTCGGACTAAT 37573 Query 164213 CGGTTTCATGCTTCGGCAGTTTGAAATTGCACGTCTTGTAGGTATCCGTCCGTACAATGC 164272 ||||| ||| | || || |||||| |||| || || | || || || ||||| Sbjct 37574 AGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCCGTGCAATTGCGACCTTATAATGC 37633 Query 164273 TATTGCGTTCTCTGGTCCGATTGCTGTCTTTGTCAGCGTTTTCCTTATGTACCCTCTCGG 164332 || || ||||||||||| |||||||| ||||| || ||||| || || || || || Sbjct 37634 AATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTATTCCTGATTTATCCACTAGG 37693 Query 164333 GCAATCTAGTTGGTTCTTTGCCCCCTCGTTTGGGGTCGCGGCGATCTTCAGATTCCTCTT 164392 || ||| ||||||| ||||| || ||||| || || || || || ||||| || | Sbjct 37694 TCAGTCTGGTTGGTTTTTTGCGCCTAGTTTTGGTGTAGCAGCTATATTTCGATTCATCCT 37753 Query 164393 GTTCCTCCAAGGTTTCCATAACTGGACACTCAACCCCTTCCATATGATGGGTGTTGCAGG 164452 || ||||||| || ||||||||||| || ||||| || ||||||||||| ||||| || Sbjct 37754 CTTTTTCCAAGGGTTTCATAACTGGACGCTGAACCCATTTCATATGATGGGGGTTGCCGG 37813 Query 164453 CATCCTTGGTGGTGCTCTTCTCTGTGCTATTCATGGTGCTACCGTAGAGAATACTTTGTT 164512 | | | |||| |||||| || || ||||||||||||||||| ||||| |||||||| || Sbjct 37814 CGTATTAGGTGCTGCTCTGCTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATT 37873 Query 164513 TGAAGATGGTGAACAATCAAATACTTTCAAGGCATTCGAGCCTACTCAAGAGGAAGAGAC 164572 |||||||||||| ||||||| ||| || || | || ||||||| ||||| || Sbjct 37874 TGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAAAC 37933 Query 164573 TTACTCGATGGTCACTGCCAACCGCTTCTGGTCTCAGATTTTTGGTATTGCTTTCAGCAA 164632 ||| || ||||| || || |||||||| ||||| || || ||||| ||||||| ||| Sbjct 37934 TTATTCAATGGTTACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAA 37993 Query 164633 TAAGCGTTGGTTGCACTTCTTTATGCTCTTTGTTCCTGTCATGGGACTTTGGACAAGTTC 164692 ||| |||||||| || ||||||||| | ||||| || || | || | |||| ||| | Sbjct 37994 TAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGC 38053 Query 164693 TATTGGTATCATCGGTCTCGCACTCAATCTTCGTGCTTATGATTTTGTGTCTCAGGAGAT 164752 | |||| | ||||||| || || ||||| ||||| ||||| || || ||||||||||| Sbjct 38054 TCTTGGAGTAGTCGGTCTGGCTCTGAATCTACGTGCCTATGACTTCGTTTCTCAGGAGAT 38113 Query 164753 TAGAGCAGCAGAGGATCCTGAATTTGAGACGTTCTATACGAAGAACATCCTCCTCAATGA 164812 | ||||| || ||||||||||||||||| ||||| || || || || ||| | || || Sbjct 38114 CCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACTAAAAATATTCTCTTAAACGA 38173 Query 164813 AGGACTCCGTGCCTGGATGGCTCCAGTAGACCAGCCACACGAATCGTTTGTATTTCCAGA 164872 ||| | ||||| |||||||| | ||| ||||| || ||| || |||| || || Sbjct 38174 AGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGA 38233 Query 164873 GGAAGTTCTTCCGAGAGGTAACGCACTCTAA 164903 ||| ||||| || | || ||||| || ||| Sbjct 38234 GGAGGTTCTACCACGTGGAAACGCTCTTTAA 38264 >seq456 Length=400266 Score = 174 bits (192), Expect = 2e-38 Identities = 328/476 (69%), Gaps = 10/476 (2%) Strand=Plus/Minus Query 164335 AATCTAGTTGGTTCTTTGCCCCCTCGTTTGGGGTCGCGGCGATCTTCAGATTCCTCTTGT 164394 ||| | |||| || ||| | || ||| | || || | || || ||||| |||| | Sbjct 321093 AATTTGGTTGATTTTTTATGCTTTCCTTTTGTGTAGCAACTATATTTCGATTCATCTTCT 321034 Query 164395 TCCTCCAAGGTTTCCATAACTGGACACTCAACCCCTTCCATATGATGGGTGTTGCAGGCA 164454 | |||||| || |||||| || | ||||| || ||||||| ||| ||||| |||| Sbjct 321033 TTTTCCAAGAGTTTTATAACTAGATGTTGAACCCATTTCATATGACGGGAGTTGCCGGCA 320974 Query 164455 TCCT-TGGTGG----TGCTCTTCTCTGTGCTATTCATGGTGCTACCGTAGAGAATACTTT 164509 | | | ||| |||||| || || |||||||| ||| || ||||| || ||||| Sbjct 320973 TATTGTATTGGGCACTGCTCTGCTATGCACTATTCATAGTGTTATTGTAGAAAAGACTTT 320914 Query 164510 GTTTGAAGATGGTGAACAATCAAATACTTTCAAGGCATTCGAGCCTACTCAAGAGGAAGA 164569 | |||||||||||| ||| ||||| | | || | || |||||| ||||| Sbjct 320913 ATCTGAAGATGGTGATGGTGTAAACACTTTGCATACCTTTAAACCAACTCAATCTGAAGA 320854 Query 164570 GACTTACTCGATGGTCACTGCCAACCGCTTCTGGTCTCAGATTTTTGGTATTGCTTTCAG 164629 ||||| || | ||||||||||||| ||| |||||||| || ||||| |||||||| Sbjct 320853 AACTTATTCAGTCGTCACTGCCAACCACTTTTGGTCTCAAATCTTTGG-ATTGCTTTTTC 320795 Query 164630 CAATAAGCGTTGGTTGCACTTCTTTATGCTCTTTGTTCCTGTCATGGGACTTTGGACAAG 164689 ||||| |||| || | ||||||||| | | | | || || || | | | || || Sbjct 320794 TAATAAATGTTGATTATATTTCTTTATGTTATCTATACCAGTAATCGATTTATAGATGAG 320735 Query 164690 TTCTATTGGTATCATCGGTCTCGCACTCAATCTTCGTGCTTATGATTTTGTGTCTCAGGA 164749 | || || | || ||| | | | ||||||| |||| ||||| |||| ||||| || Sbjct 320734 TGCTCTTAGAATAGTCGATTTGACTTTCAATCTATGTGCCTATGACTTTGCTTCTCAAGA 320675 Query 164750 GAT-TAGAGCAGCAGAGGATCCTGAATTTGAGACGTTCTATACGAAGAACATCCTC 164804 || || | || || |||||||| || |||| ||||| || || || || ||| Sbjct 320674 AATCTATA--AGAGGAAAATCCTGAA-TTCAGACTTTCTACACTAAAAATATTCTC 320622 >seq214 Length=442246 Score = 118 bits (130), Expect = 1e-21 Identities = 155/212 (73%), Gaps = 7/212 (3%) Strand=Plus/Plus Query 164301 TTTGTCAGCGTTTTCCTTATGTACCCTCTCGGGCAATCTAGTTGGTTCTTTGCCCCCTCG 164360 |||||| | | ||||| || || ||||| || || ||| ||||||| ||||| || Sbjct 75037 TTTGTC--CATATTCCTGATTTATCCTCTGGGTCAGTCTGGTTGGTTTTTTGCGCCAGT- 75093 Query 164361 TTTGGGGTCGCGGCGATCTTCAGATTCCTCTTGTTCCTCCAAGGTTTCCATAACTGGACA 164420 ||||| || || || || || ||||| || | || ||||||| || ||||||| Sbjct 75094 TTTGGTGTAGCAGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTAATAACTG---- 75149 Query 164421 CTCAACCCCTTCCATATGATGGGTGTTGCAGGCATCCTTGGTGGTGCTCTTCTCTGTGCT 164480 || ||||| || ||||| ||||| ||||| || | | |||| |||||| || ||| Sbjct 75150 CTGAACCCATTTCATATCATGGGGGTTGCCAGCGTATTAGGTGCTGCTCTGTAATGCGCT 75209 Query 164481 ATTCATGGTGCTACCGTAGAGAATACTTTGTT 164512 |||||||||| ||| ||||| |||||||| || Sbjct 75210 ATTCATGGTGGTACTGTAGAAAATACTTTATT 75241 >seq102 Length=2022542 Score = 105 bits (116), Expect = 7e-18 Identities = 225/335 (67%), Gaps = 2/335 (1%) Strand=Plus/Plus Query 160744 GAAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACTTCT 160803 |||| || || || | |||||| || ||||| ||| || || | | | || || | Sbjct 1591986 GAAATAATATTATTTATGGTGCCATTATTCCTACTTTTGCAGCTATAGATTTGCATTTTT 1592045 Query 160804 ACCCCATTTGGGAAGCTGCATCTCTTGATGAATGGCTCTACAATGGTGGTCCTTACCAAC 160863 |||| || ||||||| ||| | |||||||||| | ||||||| |||| |||| | | Sbjct 1592046 ACCCAATACGGGAAGCATCATTTATTGATGAATGATTATACAATGATGGTTCTTATGAGC 1592105 Query 160864 TGGTCGTATTTCACTTCCTGATCGGCATCTTCTGCTACATGGGTCGCGAGTGGGAACTT- 160922 | | || | | ||| | | || | || |||||||||| ||||| || || Sbjct 1592106 TAATTGTTCTATATTTCTTACTTGGTGTAGCTTGTTACATGGGTCCTAAGTGGAAAGTTA 1592165 Query 160923 -TCCTACCGCCTCGGCATGCGCCCCTGGATCTGCGTTGCATATTCTGCACCTGTTGCTGC 160981 | | || || | |||||||| ||||| ||| | ||||| | ||| || | Sbjct 1592166 GTTTTTCCATCTGCGTATGCGCCCTTGGATTGTAGTTACGTATTCAACTCCTATTATAGT 1592225 Query 160982 TGCGAGTGCAGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGGTATGCC 161041 ||| | | | || ||| | ||||||| | |||||||| || | |||||||||||| Sbjct 1592226 TGCTACTACTGTTTTCTTGATCTATCCAATTGGTCAAGGAAGCTTTTTTGATGGTATGCC 1592285 Query 161042 CCTGGGTATCTCTGGTACCTTCAACTTCATGCTTG 161076 || || |||||| |||| |||||| | ||| ||| Sbjct 1592286 TCTAGGAATCTCTAGTACTTTCAACATTATGATTG 1592320 >seq823 Length=108574 Score = 104 bits (114), Expect = 3e-17 Identities = 132/179 (74%), Gaps = 2/179 (1%) Strand=Plus/Plus Query 160636 TCCCAACTCTGTTGGCAGCAACCGTCTGC-TTTATTACTGCGTTCGTTGCTGCTCCCCCC 160694 |||| ||| | ||| | ||||| |||| ||||||| || ||| ||||||| || || Sbjct 46615 TCCCTACTTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTCATTGCTGCACCTCCG 46673 Query 160695 GTGGACATCGACGGTATCCGTGAACCCGTTGCTGGTTCACTGATGTATGGAAACAACATC 160754 || || || || ||||| |||||||| ||| |||| || || | ||||||||||| || Sbjct 46674 GTAGATATTGATGGTATTCGTGAACCTGTTTCTGGGTCTCTACTTTATGGAAACAATATT 46733 Query 160755 ATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACTTCTACCCCATTTG 160813 || |||||||| || ||||| |||| || || ||| | || || ||||| || || Sbjct 46734 ATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTACCCAATATG 46792 >seq135 Length=947859 Score = 93.3 bits (102), Expect = 5e-14 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 161025 TTCTCTGATGGTATGCCCCTGGGTATCTCTGGTACCTTCAACTTCATGCTTGTCTTCCAG 161084 || |||||||||||||| | || ||||| |||| |||||||| ||| |||| ||||| Sbjct 378311 TTTTCTGATGGTATGCCTATAGGAATCTCCAGTACTTTCAACTTTATGATTGTATTCCAA 378252 Query 161085 GCAGAACACAACATCCTGATGCACCCCTTCCACATGTTGGG 161125 || || || |||||||| |||||||| || ||||||| || Sbjct 378251 GCTGAGCAGAACATCCTTATGCACCCATTTTACATGTTAGG 378211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559285882601600