Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq54391 134 3e-29 seq55692 102 2e-19 seq55279 100 7e-19 seq56570 96.9 9e-18 seq48569 77.0 8e-12 seq1581 73.4 1e-10 >seq54391 Length=48172 Score = 134 bits (148), Expect = 3e-29 Identities = 120/150 (80%), Gaps = 4/150 (3%) Strand=Plus/Plus Query 87 GGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATTGTTACGGCCGCC 146 ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| | Sbjct 19756 GGTCGGAACTTACCCGACAAGGAATTTTGCTACCTTAGGACCGTTATAGTTACGGCCGGC 19815 Query 147 GTTTACCGGGGCTTCGATCAAGAGCT----TCGCGTTAGCTAACCCCATCAATTAACCTT 202 ||| |||||||||||| || ||| | | | || | ||| | || ||||| Sbjct 19816 GTTCACCGGGGCTTCGGTCGCCGGCTCCCCTGTCATCAGGTCACCAACTTCCTTGACCTT 19875 Query 203 CCGGCACCGGGCAGGCGTCACACCCTATAC 232 ||||||| |||||||||||| ||| |||| Sbjct 19876 CCGGCACTGGGCAGGCGTCAGCCCCCATAC 19905 >seq55692 Length=1752543 Score = 102 bits (112), Expect = 2e-19 Identities = 86/106 (81%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| || || ||||||| |||||| ||||| | ||| |||||| Sbjct 173820 GCATCTTCACAGACATGTCTATTTCACCAAGTCTCTCTCCGAGACCGTGCCCAGATCGTT 173761 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTA 118 | ||| |||||||||||||||||||||||||||| |||||||||| Sbjct 173760 ATGCCTCTCGTGCAGGTCGGAACTTACCCGACAAGCAATTTCGCTA 173715 >seq55279 Length=95036 Score = 100 bits (110), Expect = 7e-19 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 27 ATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTTACGCCATTCGTGCA 86 || || |||||| ||||||| ||| || ||| ||||||| | | ||||||| Sbjct 65877 ATGTCTATTTCATCGAGTCTCTCTCCAAGATAGTGCCTAGATCGTTATGTCTTTCGTGCT 65936 Query 87 GGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATTGTTACGGCCGCC 146 |||| |||||||||||||| ||||| ||||| |||| |||||||| |||| | |||| Sbjct 65937 AGTCGAAACTTACCCGACAAAGAATTCTGCTACGTTAGAACCGTTATAGTTATGATCGCC 65996 Query 147 GTTTACCGGGGCTTCGAT 164 || || ||||||||||| Sbjct 65997 ATTCACAGGGGCTTCGAT 66014 >seq56570 Length=6353 Score = 96.9 bits (106), Expect = 9e-18 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 27 ATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTTACGCCATTCGTGCA 86 || || |||||| ||||||| ||| || ||| || |||| | | ||||||| Sbjct 6118 ATGTCTATTTCATCGAGTCTCTCTCCAAGATAGTGCCTAGATTGTTATGTCTTTCGTGCT 6059 Query 87 GGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATTGTTACGGCCGCC 146 |||| |||||||||||||| ||||| ||||| |||| |||||||| |||| | |||| Sbjct 6058 AGTCGAAACTTACCCGACAAAGAATTCTGCTACGTTAGAACCGTTATAGTTATGATCGCC 5999 Query 147 GTTTACCGGGGCTTCGAT 164 || |||||| ||||||| Sbjct 5998 ATTCACCGGGACTTCGAT 5981 >seq48569 Length=38059 Score = 77.0 bits (84), Expect = 8e-12 Identities = 110/154 (71%), Gaps = 2/154 (1%) Strand=Plus/Minus Query 11 CTGCATCTTCACAGCGATTTCAATTTCACTGAG--TCTCGGGTGGAGACAGCGCCGCCAT 68 || |||||||||| || | ||||||||||| |||| | |||||| ||| || Sbjct 10836 CTCCATCTTCACAATAATGTTTATTTCACTGAGATTCTCTCTTCAAGACAGTGCCCAGAT 10777 Query 69 CGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACC 128 ||||||||| | | | | | ||||||||| |||||||| ||| ||| |||| ||| Sbjct 10776 CGTTACGCCTTACTTAAGGATTAAAACTTACCCAACAAGGAACTTCACTATTTTAGAACC 10717 Query 129 GTTATTGTTACGGCCGCCGTTTACCGGGGCTTCG 162 || || |||| || | |||| || || ||||| Sbjct 10716 GTCATAGTTATGGTGGTCGTTCACTGGAACTTCG 10683 >seq1581 Length=1548958 Score = 73.4 bits (80), Expect = 1e-10 Identities = 58/70 (83%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 104 CAAGGAATTTCGCTACCTTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGA 163 |||||||||| ||||||||||| | |||| |||| |||| |||||||||||||||| | Sbjct 341217 CAAGGAATTTTGCTACCTTAGGTCAGTTAGAGTTAGTGCCGACGTTTACCGGGGCTTCCA 341158 Query 164 TCAAGAGCTT 173 | | ||||| Sbjct 341157 TTCAAAGCTT 341148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1259466035776