Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq55457 111 3e-22 seq977 109 1e-21 seq55399 96.9 7e-18 seq1727 82.4 1e-13 seq55643 80.6 5e-13 >seq55457 Length=143570 Score = 111 bits (122), Expect = 3e-22 Identities = 99/124 (80%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 216 AAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCT 275 || || | ||||| | |||| ||| | |||| | ||| |||| ||||||||||||| || Sbjct 113648 AAGGGTAGAAGGGAGCTTGAATGCAAGACCCACCCGTCGAGCAAGGACGAAAGTCGGCCT 113707 Query 276 TAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGG 335 || ||||||| |||||| || ||||| || |||| ||| ||||||||||| ||| || || Sbjct 113708 TAGTGATCCGACGGTGCCGAGTGGAAGGGTCGTCACTCAACGGATAAAAGTTACTCTAGG 113767 Query 336 GATA 339 |||| Sbjct 113768 GATA 113771 >seq977 Length=2171826 Score = 109 bits (120), Expect = 1e-21 Identities = 149/203 (73%), Gaps = 4/203 (2%) Strand=Plus/Minus Query 129 CAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTC-A 187 |||||| ||||||| |||||||||| ||||| ||||| | |||| | |||| | Sbjct 478466 CAGTTTCTATGGGGCGTAGGCCTCCCAAAAAGTAATGGAGGTGTGTAAAGGTTTCCTCGA 478407 Query 188 GCTTGGATGGAAACCATGCGCACA-GTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCC 246 || ||| | | || | || ||||||||| | ||||| | |||||||| | || | Sbjct 478406 GCCAA-ATGAAGATTG-GCCCTCAAGTGCAAAGGTAGAAGGGAGCTTGACTGCAAGACTC 478349 Query 247 TCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCC 306 | || |||||||||||||||| | |||| |||||| |||||| | ||||| ||| Sbjct 478348 ACCCATCGAGCAGGGACGAAAGTCAGCCTTAGTGATCCAACGGTGCCAAGTGGAAGGGCA 478289 Query 307 GTCGCTCGACGGATAAAAGCTAC 329 |||||| ||||||||||| ||| Sbjct 478288 GTCGCTTAACGGATAAAAGTTAC 478266 >seq55399 Length=661350 Score = 96.9 bits (106), Expect = 7e-18 Identities = 77/93 (83%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 232 TTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTG 291 |||||||| | |||| | ||| ||||||||| ||||| || |||| ||||||| ||||| Sbjct 347852 TTGACTGCAAGACCCACCTGTCGAGCAGGGACAAAAGTTGGCCTTAGTGATCCGACGGTG 347793 Query 292 CTGAATGGAACGGCCGTCGCTCGACGGATAAAA 324 | || ||||| ||||||||||| || ||||||| Sbjct 347792 CCGAGTGGAAGGGCCGTCGCTCAACTGATAAAA 347760 >seq1727 Length=144193 Score = 82.4 bits (90), Expect = 1e-13 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 211 AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTC 270 |||||||||||| |||||||||||||| | | || | || | ||||||||||||| Sbjct 121759 AGTGCAAAGGCAGAAGGGTGTTTGACTACATGATCCACCCATCAATTAGGGACGAAAGTC 121818 Query 271 GGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAA 323 | ||||||||||| || ||| | ||||| ||| ||| ||||| ||||| Sbjct 121819 AGCCTTAATGATCCAGCAATGCCAAGTGGAAGGGCTGTCCCTCGATAAATAAA 121871 >seq55643 Length=1918189 Score = 80.6 bits (88), Expect = 5e-13 Identities = 67/82 (82%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 258 AGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACG 317 |||||||||||| || |||| ||||||| | || | || ||||| || ||||||| ||| Sbjct 84371 AGGGACGAAAGTTGGCCTTAGTGATCCGACAGTTCCGAGTGGAAGGGTTGTCGCTCAACG 84312 Query 318 GATAAAAGCTACCCTGGGGATA 339 |||||||| ||| || |||||| Sbjct 84311 GATAAAAGTTACTCTAGGGATA 84290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981360591328