Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq54053 170 4e-40 seq1576 138 2e-30 seq52266 132 1e-28 seq55670 129 1e-27 seq55523 113 1e-22 seq2117 109 1e-21 seq1108 82.4 2e-13 seq55404 78.8 2e-12 seq52648 77.0 7e-12 >seq54053 Length=25039 Score = 170 bits (188), Expect = 4e-40 Identities = 157/196 (80%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 || || | ||| || |||||| | | ||| |||||||| | | | |||||||||| || Sbjct 17124 TTCACGACCCGTAGGCCTTCTACCTC-CACACGGCATTGCTTCGTT-AGGCTTTCGCTCA 17181 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 ||| || |||||||||| || |||||||||||||||||| | ||||||||| ||||| Sbjct 17182 TTGCGAAAAATTCCCCACTACTACCTCCCGTAGGAGTCTGGGTCATGTCTCAGTCCCAGT 17241 Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181 ||| ||||||||||| |||||| || ||| |||| || |||| || ||| || ||||||| Sbjct 17242 GTGGCTGATCATCCTATCAGACTAGCTACTGATCATCACCTTAGTAAGCTATCACCTCAC 17301 Query 182 CAACTAGCTAATCCGA 197 ||| ||||||||| || Sbjct 17302 CAATTAGCTAATCAGA 17317 >seq1576 Length=905477 Score = 138 bits (152), Expect = 2e-30 Identities = 109/131 (83%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 68 AATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACT 127 || |||| ||||| ||||||||| ||||||||||| || ||||| ||| ||||| || || Sbjct 652544 AAAATTCTCCACTACTGCCTCCCATAGGAGTCTGGGCCATGTCTTAGTCCCAGTTTGGCT 652485 Query 128 GATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTA 187 |||||||||| ||||||| ||| |||| | |||||| | ||| ||| ||||||||| || Sbjct 652484 GATCATCCTCCTAGACCAGCTACTGATCATTGCCTTGATAAGCTATTGCCTCACCAATTA 652425 Query 188 GCTAATCCGAC 198 ||||||| ||| Sbjct 652424 GCTAATCAGAC 652414 >seq52266 Length=99798 Score = 132 bits (146), Expect = 1e-28 Identities = 108/131 (82%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 68 AATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACT 127 || |||| ||||| ||||||||| ||||||||||| || ||||| ||| ||||| || | Sbjct 3193 AAAATTCTCCACTACTGCCTCCCATAGGAGTCTGGGCCATGTCTTAGTCCCAGTTTGGTT 3134 Query 128 GATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTA 187 |||||||||| |||||| ||| |||| | |||||||| ||| ||| ||||||||| || Sbjct 3133 GATCATCCTCCTGGACCAGCTACTGATCATTGCCTTGGTAAGCTATTGCCTCACCAATTA 3074 Query 188 GCTAATCCGAC 198 ||||||| ||| Sbjct 3073 GCTAATCAGAC 3063 >seq55670 Length=972380 Score = 129 bits (142), Expect = 1e-27 Identities = 146/193 (76%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 17 CCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCC 76 ||||||| ||| ||| ||||| ||||| | ||||| |||||||||||| |||||| Sbjct 332881 CCTTCTT-CACTTGCGCAACATTGT-TGGATTGGACTTTCACCCATTGTCCAAGATTCCC 332824 Query 77 CACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCT 136 ||||||| |||| || ||||| || ||||||||||| || ||| ||||||||| Sbjct 332823 CACTGCTATCTCCTGTGGGAGTTCGGGTCGTGTCTCAGTCTCAACGTGGTTGATCATCCG 332764 Query 137 CTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCG 196 ||||||| || | ||| | |||||| |||| ||| || |||||||| |||| | Sbjct 332763 AAAAGACCAGCTAAGCATCATTAGCTTGGTTAGCCTTTAACTAACCAACTACTTAATACT 332704 Query 197 ACCTAGGCTCATC 209 || |||||||||| Sbjct 332703 ACGTAGGCTCATC 332691 >seq55523 Length=128304 Score = 113 bits (124), Expect = 1e-22 Identities = 113/147 (77%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 52 CTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCT 111 |||||||| ||||| || |||| ||| ||||||||| |||||||||||| || | | Sbjct 64606 CTTTCGCCTATTGTGAAAAATTCTCCAATGCTGCCTCTTGTAGGAGTCTGGGTTGTATAT 64547 Query 112 CAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCC 171 |||| || |||| |||||||| || ||||||||| || | | |||||||| | ||| Sbjct 64546 CAGTCTCATTGTGGCTGATCATTCTGTCAGACCAGCTATTGGCCATCGCCTTGCTAAGCT 64487 Query 172 ATTACCTCACCAACTAGCTAATCCGAC 198 ||| | |||||| ||| ||||| ||| Sbjct 64486 ATTGCTTCACCAGTTAGATAATCAGAC 64460 >seq2117 Length=755057 Score = 109 bits (120), Expect = 1e-21 Identities = 128/171 (75%), Gaps = 9/171 (5%) Strand=Plus/Plus Query 32 GCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATA-TTCCCCACTGCTGCCT--- 87 ||| ||||| || ||| |||||||| ||||| | || | || |||||||||||| Sbjct 193262 GCGACATTG-CTCCATCCGGCTTTCGTCCATTATGAAAAAATTTTCCACTGCTGCCTAAT 193320 Query 88 ----CCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGAC 143 || ||| ||||||||| ||||||||| | ||||| || ||||||||||||| | | Sbjct 193321 GCCTCCTGTAAGAGTCTGGATCGTGTCTCAATCCCAGTATGGCTGATCATCCTCTTGGTC 193380 Query 144 CAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATC 194 ||| ||| ||| |||||||| | | ||| | |||||| || ||||||| Sbjct 193381 CAGCTACTTATCATCGCCTTGACAAACTATTGCTTCACCAGCTGGCTAATC 193431 >seq1108 Length=223479 Score = 82.4 bits (90), Expect = 2e-13 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 57 GCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTT 116 |||||||| || |||||||||| |||||||||| | ||| ||| | ||||||||||| Sbjct 171047 GCCCATTGCGGAAAATTCCCCACTCTTGCCTCCCGTTGAAGTATGGTCTGTGTCTCAGTT 171106 Query 117 CCAGTGTGACTGATCATCCTCTC 139 | ||||| || ||||||||||| Sbjct 171107 CTAGTGTAGCTAATCATCCTCTC 171129 >seq55404 Length=908434 Score = 78.8 bits (86), Expect = 2e-12 Identities = 54/61 (89%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 78 ACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTC 137 |||||||||||| |||||||||||| |||||||||| ||| |||||| || |||||||| Sbjct 594488 ACTGCTGCCTCCTGTAGGAGTCTGGGCCGTGTCTCAATTCTAGTGTGCCTATTCATCCTC 594547 Query 138 T 138 | Sbjct 594548 T 594548 >seq52648 Length=31492 Score = 77.0 bits (84), Expect = 7e-12 Identities = 74/95 (78%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 92 TAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACG 151 ||| |||||| ||| |||| | ||||||| ||| |||||||||||||||| ||| Sbjct 10448 TAGTAGTCTGAGTAGTGCCTCAATCTCAGTGTGGCTGGTCATCCTCTCAGACCAACTACT 10389 Query 152 GATCGTCGCCTTGGTGAGCCATTACCTCACCAACT 186 |||||||||||| | || ||| |||||||||| Sbjct 10388 GATCGTCGCCTTCGAAAGATATTGTCTCACCAACT 10354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1070865791840