Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq54053 141 2e-31 seq1576 123 5e-26 seq52266 118 2e-24 seq55523 95.1 2e-17 seq55670 93.3 8e-17 seq52648 73.4 8e-11 >seq54053 Length=25039 Score = 141 bits (156), Expect = 2e-31 Identities = 213/300 (71%), Gaps = 16/300 (5%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | | ||| |||| | ||||| | || || ||||||| || |||||||||| Sbjct 17155 GGCATTGCTTCGTTAGGCTTTCGCTCATTGCGAAAAATTCCCCACTACTACCTCCCGTAG 17214 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||| | ||||||||||||| |||||| | ||| ||| |||| | ||||| ||| Sbjct 17215 GAGTCTGGGTCATGTCTCAGTCCCAGTGTGGCTGATCATCCTATCAGACTAGCTACTGAT 17274 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 | || ||| || ||||| | |||||||| || |||||| | || | ||| || | | Sbjct 17275 CATCACCTTAGTAAGCTATCACCTCACCAATTAGCTAATCAGATGCAAACCCCTCCTCAA 17334 Query 181 GCGATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTC 240 | | || | | || ||| ||||| | | || | ||||||| | || Sbjct 17335 GAG---GATTTCTCCTC--------TTGC--TCCTCAGCC--TACGGGGTATTAACAGTC 17379 Query 241 GTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGC 300 ||||||| ||| ||||| | || || ||||| || |||||||||||||| ||||| Sbjct 17380 GTTTCCAGCTGTTGTTCCATTTCCAAGGGTAGGTT-CTTACGTGTTACTCACCTATCCGC 17438 >seq1576 Length=905477 Score = 123 bits (136), Expect = 5e-26 Identities = 116/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 28 TTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAAT 87 ||| | || || | ||||| ||||||||| |||||||||||||| ||||| ||||||| | Sbjct 652550 TTGCGGAAAATTCTCCACTACTGCCTCCCATAGGAGTCTGGGCCATGTCTTAGTCCCAGT 652491 Query 88 GTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATCTCAC 147 |||| | ||| |||| || || ||||| |||| | | |||| | |||||| ||||| Sbjct 652490 TTGGCTGATCATCCTCCTAGACCAGCTACTGATCATTGCCTTGATAAGCTATTGCCTCAC 652431 Query 148 CAACTACCTAATCGGCCGCGAGCCCATC 175 ||| || |||||| | ||||||||| || Sbjct 652430 CAATTAGCTAATCAGACGCGAGCCCCTC 652403 >seq52266 Length=99798 Score = 118 bits (130), Expect = 2e-24 Identities = 115/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 28 TTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAAT 87 ||| | || || | ||||| ||||||||| |||||||||||||| ||||| ||||||| | Sbjct 3199 TTGCGGAAAATTCTCCACTACTGCCTCCCATAGGAGTCTGGGCCATGTCTTAGTCCCAGT 3140 Query 88 GTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATCTCAC 147 ||| | ||| |||| | || ||||| |||| | | |||||| |||||| ||||| Sbjct 3139 TTGGTTGATCATCCTCCTGGACCAGCTACTGATCATTGCCTTGGTAAGCTATTGCCTCAC 3080 Query 148 CAACTACCTAATCGGCCGCGAGCCCATC 175 ||| || |||||| | ||||||||| || Sbjct 3079 CAATTAGCTAATCAGACGCGAGCCCCTC 3052 >seq55523 Length=128304 Score = 95.1 bits (104), Expect = 2e-17 Identities = 117/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 19 TTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTC 78 |||| || |||||| || || | ||| ||||||||| ||||||||||||| || | || Sbjct 64605 TTTCGCCTATTGTGAAAAATTCTCCAATGCTGCCTCTTGTAGGAGTCTGGGTTGTATATC 64546 Query 79 AGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTA 138 |||| || |||||| | ||| || |||| || |||| | | ||| |||| | |||| Sbjct 64545 AGTCTCATTGTGGCTGATCATTCTGTCAGACCAGCTATTGGCCATCGCCTTGCTAAGCTA 64486 Query 139 TTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTT 178 || |||||| || ||||| | ||||| ||| || || Sbjct 64485 TTGCTTCACCAGTTAGATAATCAGACGCGAACCCCTCCTT 64446 >seq55670 Length=972380 Score = 93.3 bits (102), Expect = 8e-17 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 19 TTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTC 78 |||| |||||||| ||| || |||||||||| |||| || ||||| ||| |||||||| Sbjct 332847 TTTCACCCATTGTCCAAGATTCCCCACTGCTATCTCCTGTGGGAGTTCGGGTCGTGTCTC 332788 Query 79 AGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTA 138 |||| ||| |||| | ||| || || || |||| ||| | ||||||| || Sbjct 332787 AGTCTCAACGTGGTTGATCATCCGAAAAGACCAGCTAAGCATCATTAGCTTGGTTAGCCT 332728 Query 139 TTATCTCACCAACTACCTAAT 159 ||| || ||||||||| |||| Sbjct 332727 TTAACTAACCAACTACTTAAT 332707 >seq52648 Length=31492 Score = 73.4 bits (80), Expect = 8e-11 Identities = 73/95 (77%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 58 TAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACC 117 ||| |||||| | ||| |||| || || |||||| | ||| |||||||| || |||| Sbjct 10448 TAGTAGTCTGAGTAGTGCCTCAATCTCAGTGTGGCTGGTCATCCTCTCAGACCAACTACT 10389 Query 118 GATCGTCGGCTTGGTGGGCTATTATCTCACCAACT 152 |||||||| ||| | | |||| ||||||||||| Sbjct 10388 GATCGTCGCCTTCGAAAGATATTGTCTCACCAACT 10354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 997343662848