Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq21111 194 4e-47 seq55733 118 2e-24 seq53960 82.4 2e-13 >seq21111 Length=2138 Score = 194 bits (214), Expect = 4e-47 Identities = 291/403 (72%), Gaps = 18/403 (4%) Strand=Plus/Plus Query 7 CGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACCCTGGAA 66 ||||| ||||||| |||||| || ||||||||| | || ||| | | |||| Sbjct 799 CGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGATGAACCTTGCGGAGGAA 858 Query 67 CCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCTGCATTC 125 ||||| | | |||| | | |||||| |||| | || |||||| ||| ||||| Sbjct 859 CCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCGACATTC 918 Query 126 TCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGA--CACGACG 181 || || ||| || |||||| | || | | | ||||| || || | || ||| Sbjct 919 TCGCTTCCGCTTCG--TCCACCGCTGC-TCGCGCAGGTGCTTCCCC-CTAAGGCAGAACG 974 Query 182 CTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAAGCCCCGC 237 |||||||||| | | ||| | |||||||||| || || |||| |||||| Sbjct 975 CTCCCCTACCGATGCCTTTTTACA---TCCCACAGCTTCTGCAAATCGCTTA-GCCCCGT 1030 Query 238 TACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGATGGC 297 | ||| ||||||| | | || || |||||||||||||||||||||||||||| |||| Sbjct 1031 T-CATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTTTCAAGGGTGGC 1089 Query 298 TGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAGTCAC 357 |||||| | || |||||||||||||||| ||| | | || |||||| ||||||| Sbjct 1090 TGCTTCTAGGCAAACCTCCTGGTTGTCTCTGCACCCCTACCTCCTTTATCACTGAGCGGT 1149 Query 358 CACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 || ||||| |||||||||| ||||||||||||||||||||||| Sbjct 1150 CATTTAGGAGCCTTAGCTGGTGATCTGGGCTGTTTCCCTCTCG 1192 >seq55733 Length=1641379 Score = 118 bits (130), Expect = 2e-24 Identities = 144/194 (74%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 207 CCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCA 266 ||| ||||| || || | ||| |||||| | ||| ||||||| | | || | || Sbjct 571083 CCATAGCTTTTGCAAATCATTTA-GCCCCGTT-CATCTTCGGCGCAAGAGCGCTCAATCA 571140 Query 267 GTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTA 326 ||||||||||| ||||||||||||| ||||| ||| | || |||||| ||| ||||| Sbjct 571141 ATGAGCTATTACACACTCTTTCAAGGGTGGCTATTTCTAGGCAAACCTCTTGGCTGTCTC 571200 Query 327 CGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGG 386 ||| | | || |||||| |||| || || |||||| |||||||| ||||| | | Sbjct 571201 TGCACCCCTACCTCCTTTATCACTATGTGGTCATTTAGGGACCTTAGCTAATGATTTAGA 571260 Query 387 CTGTTTCCCTCTCG 400 ||||||||||||| Sbjct 571261 TTGTTTCCCTCTCG 571274 >seq53960 Length=54589 Score = 82.4 bits (90), Expect = 2e-13 Identities = 88/115 (77%), Gaps = 6/115 (5%) Strand=Plus/Minus Query 213 CTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGC---GGAATCACTTGACCAGTG 269 |||| | | || |||| ||||| | |||||| |||| || ||| || ||| |||| Sbjct 37285 CTTCAGTGAATCACTTGAGCCCTGATACATTTTCGGTGCCATGGAG---CTAGACTAGTG 37229 Query 270 AGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTC 324 |||||||| || |||| || ||||||| |||||||||| |||||||| ||||| Sbjct 37228 AGCTATTATGCTTTCTTCAAATGATGGCTACTTCCAAGCCCACCTCCTGATTGTC 37174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1176354063872