Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq51629 123 4e-26 seq54053 80.6 4e-13 >seq51629 Length=49189 Score = 123 bits (136), Expect = 4e-26 Identities = 163/225 (72%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 69 ATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAGAAA 128 || |||||||||||||||||| ||| | |||||| |||| || | | |||| || Sbjct 46350 ATCTCTACGCATTTCACCGCTCCACCGGTAATTCCCTCTGCCCCTACCGTACTCCAGCTT 46409 Query 129 AACAGTTTCAAATGCAGGCTAT---GGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185 |||||| | || |||| ||||||||||| | ||| || | ||||| Sbjct 46410 GGTAGTTTCCATCGC---CTATTCGGGGTTGAGCCCTGGGATTTGACGGCGGACTTAAAA 46466 Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTA 245 | |||||| | |||||| |||||| | |||||||||| ||||| ||| |||||| Sbjct 46467 AGTCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACACTTGCATCCTCTGTATTA 46526 Query 246 CCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||||||||||| ||||||| | ||||||||| ||| || Sbjct 46527 CCGCGGCTGCTGGCACAGAGTTAGCTGATGCTTATTCCCCAGATA 46571 >seq54053 Length=25039 Score = 80.6 bits (88), Expect = 4e-13 Identities = 77/99 (78%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 192 CTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGG 251 ||||| | ||||| ||||| | |||||||||||||||| ||| |||||| ||||| Sbjct 16995 CTACAGACGCTTTATGTCCAATCATTCCGGATAACGCTTGCATCCTCTGTATTATCGCGG 17054 Query 252 CTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 ||||||||| |||||| || ||||||| | ||| || Sbjct 17055 TTGCTGGCACAGAGTTAGTCGATGCTTATTTCCCAGATA 17093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 827950507713