Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq55457 131 3e-28 seq51223 78.8 1e-12 >seq55457 Length=143570 Score = 131 bits (144), Expect = 3e-28 Identities = 128/163 (79%), Gaps = 3/163 (2%) Strand=Plus/Minus Query 113 CTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAA 172 ||||||||||| | | || |||| |||| || || ||||| | ||| |||||||| Sbjct 113981 CTCTCGTACTAGGAAAAGGTCCTTTCAATGCTCTAACACCCACACTGAATATGGACCGAA 113922 Query 173 CTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACC 232 || |||| |||||||||||||||| ||| | || |||||||||||||||| ||||||| Sbjct 113921 CTATCTCACGACGTTCTGAACCCAACTCAC--ACCGCTTTAATGGGCGAACAACCCAACC 113864 Query 233 CTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||||| || |||| || |||| | | || |||||||||||| Sbjct 113863 CTTGGAACATACTATAGTCCCA-GTGGTGAAGAGCCGACATCG 113822 >seq51223 Length=52845 Score = 78.8 bits (86), Expect = 1e-12 Identities = 93/126 (74%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 99 TGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGAC 158 ||| | ||| ||| || || ||||||||| || ||||||||| | ||||| | | Sbjct 33501 TGTTCTTCCTGGTTCTATCATACTAAGGAAAGGTCCTCTCAATGCACTAACGCCTATATC 33560 Query 159 GGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGG 218 |||| ||||| ||| | || | || |||| |||||||||| | || |||||||||| Sbjct 33561 AGATATGGACCAAACCATTTCACAACATTCTAAACCCAGCTCATATACCGCTTTAATGGG 33620 Query 219 CGAACA 224 |||||| Sbjct 33621 CGAACA 33626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 779999706108