Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq54053 228 2e-57 seq1576 127 6e-27 seq55670 123 7e-26 seq52266 122 3e-25 seq51629 107 6e-21 seq55523 104 7e-20 seq1108 82.4 2e-13 >seq54053 Length=25039 Score = 228 bits (252), Expect = 2e-57 Identities = 250/330 (76%), Gaps = 3/330 (1%) Strand=Plus/Minus Query 161 GCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACC 220 || |||||||||||| ||||| |||| | |||||| |||| || |||||||||| | Sbjct 17320 GCATCTGATTAGCTAATTGGTGAGGTGATAGCTTACTAAGGTGATGATCAGTAGCTAGTC 17261 Query 221 TGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGC 280 ||| ||| ||||| |||||| ||| ||||||||| | ||| |||||||||||||| || Sbjct 17260 TGATAGGATGATCAGCCACACTGGGACTGAGACATGACCCAGACTCCTACGGGAGGTAGT 17201 Query 281 AGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAA 340 |||||||||| || | ||||| || ||||||| | | ||||| |||| ||| | ||| Sbjct 17200 AGTGGGGAATTTTTCGCAATGAGCGAAAGCCTAACGAAGCAATGCCGTGTGGAGGTAGAA 17141 Query 341 GGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA--TAATGACGGTACTTGAGGAGGA 398 ||||| |||||||| || ||| | || ||||| ||||| |||| || | | | Sbjct 17140 GGCCTACGGGTCGTGAACTTCTTTTCTTGGAGAAGAAGCAATGAGGGTATCTGGGAAATA 17081 Query 399 AGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGG 458 ||| || |||||| ||||||||| ||||| |||||| ||| || |||||||||||| Sbjct 17080 AGCATCGACTAACTCTGTGCCAGCAACCGCGATAATACAGAGGATGCAAGCGTTATCCGG 17021 Query 459 AATTACTGGGGCGTAAAGGGTGCGTAGGTG 488 ||| | | || | ||||| || |||| || Sbjct 17020 AATGA-TTGGACATAAAGCGTCTGTAGTTG 16992 >seq1576 Length=905477 Score = 127 bits (140), Expect = 6e-27 Identities = 112/140 (80%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 |||||||||||||||| ||||| ||| || ||||| |||||| | |||||||||| | Sbjct 652411 CGCGTCTGATTAGCTAATTGGTGAGGCAATAGCTTATCAAGGCAATGATCAGTAGCTGGT 652470 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 || |||| ||||| |||| | ||| ||| ||||| || ||| ||||||| ||||||||| Sbjct 652471 CTAGGAGGATGATCAGCCAAACTGGGACTAAGACATGGCCCAGACTCCTATGGGAGGCAG 652530 Query 280 CAGTGGGGAATATTGCACAA 299 ||||| |||| || | ||| Sbjct 652531 TAGTGGAGAATTTTCCGCAA 652550 >seq55670 Length=972380 Score = 123 bits (136), Expect = 7e-26 Identities = 178/249 (71%), Gaps = 4/249 (2%) Strand=Plus/Plus Query 168 ATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGG 227 |||| |||||||| || ||| |||| |||||| | ||| |||| | || || Sbjct 332707 ATTAAGTAGTTGGTTAGTTAAAGGCTAACCAAGCTAATGATGCTTAGCTGGTCTTTTCGG 332766 Query 228 GTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGG 287 ||||| |||| ||| ||||||||||| || |||||| || |||| |||||||||| Sbjct 332767 ATGATCAACCACGTTGAGACTGAGACACGACCCGAACTCCCACAGGAGATAGCAGTGGGG 332826 Query 288 AATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCC--T 345 ||| ||| |||||||| |||| | || || ||| | ||| || || ||||||| | Sbjct 332827 AATCTTGGACAATGGGTGAAAGTCCAATCCAACAATGTTGCGCAAGTGAAGAAGGCCAAT 332886 Query 346 TCGGGTCGTAAAGCTCTGTCCTCAA--GGAAGATAATGACGGTACTTGAGGAGGAAGCCC 403 | | | |||||||| || || | | |||| |||||| | | ||||| ||||| | Sbjct 332887 GACGCTTGGAAAGCTCTTTCATCGAGTGCGAGATCATGACGTGATTCGAGGAAGAAGCTC 332946 Query 404 CGGCTAACT 412 ||||||||| Sbjct 332947 CGGCTAACT 332955 >seq52266 Length=99798 Score = 122 bits (134), Expect = 3e-25 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 |||||||||||||||| ||||| ||| || |||||||||||| | |||||||||| | Sbjct 3060 CGCGTCTGATTAGCTAATTGGTGAGGCAATAGCTTACCAAGGCAATGATCAGTAGCTGGT 3119 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 | |||| ||||| ||| | ||| ||| ||||| || ||| ||||||| ||||||||| Sbjct 3120 CCAGGAGGATGATCAACCAAACTGGGACTAAGACATGGCCCAGACTCCTATGGGAGGCAG 3179 Query 280 CAGTGGGGAATATTGCACAA 299 ||||| |||| || | ||| Sbjct 3180 TAGTGGAGAATTTTCCGCAA 3199 >seq51629 Length=49189 Score = 107 bits (118), Expect = 6e-21 Identities = 125/165 (76%), Gaps = 3/165 (2%) Strand=Plus/Minus Query 338 GAAGGCCTTCGGGTCGTAAAGCTCTGT-CCTCAAGGAAGAT-AATGACGGTACTTGAGGA 395 |||||||| |||||| || ||| | ||| || | | |||||||||| || ||| Sbjct 46621 GAAGGCCTATAGGTCGTGAACTTCTTTTCCTGGAGAATAAGCAATGACGGTATCTGGGGA 46562 Query 396 GGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATC 455 |||| | ||||||| |||||||||||||||||||||| ||| || || |||||| Sbjct 46561 ATAAGCATCAGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGCAAGTGTTATC 46502 Query 456 CGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 |||||| | | |||||||||| || ||||||| || ||||||| Sbjct 46501 CGGAATGA-TTGGGCGTAAAGCGTCTGTAGGTGACTTTTTAAGTC 46458 >seq55523 Length=128304 Score = 104 bits (114), Expect = 7e-20 Identities = 113/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 |||||||||||| ||| |||| | | || ||||| |||||||| | || |||| | Sbjct 64457 CGCGTCTGATTATCTAACTGGTGAAGCAATAGCTTAGCAAGGCGATGGCCAATAGCTGGT 64516 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 |||| || ||||| |||||| || ||||| | || ||| |||||||| ||||||| Sbjct 64517 CTGACAGAATGATCAGCCACAATGAGACTGATATACAACCCAGACTCCTACAAGAGGCAG 64576 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAG 309 || ||| |||| || |||||| ||| |||| Sbjct 64577 CATTGGAGAATTTTTCACAATAGGCGAAAG 64606 >seq1108 Length=223479 Score = 82.4 bits (90), Expect = 2e-13 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 222 GAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCA 281 |||||| |||| || ||| | |||||||||||| | ||| ||| | |||||||||| | Sbjct 171129 GAGAGGATGATTAGCTACACTAGAACTGAGACACAGACCATACTTCAACGGGAGGCAAGA 171070 Query 282 GTGGGGAATATTGCACAATGGGCAA 306 ||||||||| || | |||||||||| Sbjct 171069 GTGGGGAATTTTCCGCAATGGGCAA 171045 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1496015494272