Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq51629 150 4e-34 seq1007 109 1e-21 seq54053 73.4 1e-10 >seq51629 Length=49189 Score = 150 bits (166), Expect = 4e-34 Identities = 164/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 || ||| |||| | ||||||| |||||||||||||||||||||| ||| || || Sbjct 46567 TGGGGAATAAGCATCAGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGCAAGT 46508 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124 |||||||||||| | ||||||||||| || ||||||| || ||||||| | || ||| Sbjct 46507 GTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGACTTTTTAAGTCCGCCGTCAAA 46448 Query 125 GGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCA 184 | | |||||||||||| || | |||||| | ||| |||| | | ||||||| Sbjct 46447 TCCCAGGGCTCAACCCCGAATAGGCGATGGAAACTACCAAGCTGGAGTACGGTAGGGGCA 46388 Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATAT 222 |||||| | ||| |||||||||||||||||| || Sbjct 46387 GAGGGAATTACCGGTGGAGCGGTGAAATGCGTAGAGAT 46350 >seq1007 Length=2400249 Score = 109 bits (120), Expect = 1e-21 Identities = 143/198 (72%), Gaps = 9/198 (5%) Strand=Plus/Minus Query 154 GAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATG 213 |||||| | ||| |||| | | ||||||| |||||| | ||| |||||||||||| Sbjct 927073 GAAACTACCAAGCTGGAGTACCGTAGGGGCAGAGGGAATTTCCGGTGGAGCGGTGAAATG 927014 Query 214 CGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTG 273 | || || || | ||||| || |||| || ||| ||| ||| |||||||| | Sbjct 927013 CATAAGGATCAGAAAGAACAACAA---CGAAAGCACTTTGTTGGGCTGACACTGACACCG 926957 Query 274 AGGCT------CGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCG 327 | || ||||||| ||| |||||| ||||||||||||| ||||||| || | Sbjct 926956 ACACTGAGAGACGAAAGCTAGGGAAGCAAATGGGATTAGATACCCCAGTAGTCCTAGCTG 926897 Query 328 TAAACGATGAATACTAGG 345 ||||||||| |||||||| Sbjct 926896 TAAACGATGGATACTAGG 926879 >seq54053 Length=25039 Score = 73.4 bits (80), Expect = 1e-10 Identities = 70/90 (78%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 13 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 72 |||| || |||||| ||||||||| ||||| |||||| ||| || ||||||||||| Sbjct 17081 AAGCATCGACTAACTCTGTGCCAGCAACCGCGATAATACAGAGGATGCAAGCGTTATCCG 17022 Query 73 GAATTACTGGGCGTAAAGGGTGCGTAGGTG 102 |||| | ||| | ||||| || |||| || Sbjct 17021 GAATGATTGGACATAAAGCGTCTGTAGTTG 16992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1201926978304