Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq21111 156 1e-35 >seq21111 Length=2138 Score = 156 bits (172), Expect = 1e-35 Identities = 370/550 (67%), Gaps = 38/550 (7%) Strand=Plus/Minus Query 35 GACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAG 94 |||||||| | |||||||| ||||| ||||||||||| | ||| | || ||||| Sbjct 1511 GACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCTTGGGTGAAACTAAGTGGAG 1452 Query 95 GTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTA 154 || |||||| ||| |||||||| |||||| ||||||| ||||| ||||||||||| || | Sbjct 1451 GTTCGAACCGACTGATGTTGAAGAATTAGCGGATGAGTTGTGGTTAGGGGTGAAATGCCA 1392 Query 155 AACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGCCTCAAGTATCA 214 | ||| || |||||||||||| |||||| || ||| || ||| | | Sbjct 1391 CTCGAACCCAGAGCTAGCTGGTTCTCCCCGAAATGCGTTGAGGCGCAGC----AGT-TGA 1337 Query 215 C----CATC-GGGGGTAGAGCACTGTTATGGCTAGGG-GGTCATTGCGACTTACCAAACC 268 | |||| |||||| ||||||||| || ||| | | ||| ||||||| | Sbjct 1336 CTGGACATCTAGGGGTAAAGCACTGTTTCGGTGCGGGCCGCGAGAGCG--GTACCAAATC 1279 Query 269 ATTGCAAACTCCGAATGC--------GCATCAGTTTTACCGCGG-----------GAGTG 309 |||||||| |||| | | ||| | || | || |||| Sbjct 1278 GAGGCAAACTCTGAATACTAGATATGACCTCAAAATAACAGGGGTCAAGGTCGGCCAGTG 1219 Query 310 AGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGC 369 || ||||| | |||| | | | ||||||| || | || || | |||||||||| Sbjct 1218 AGACGATGGGGGATAAGCTTCATCGTCGAGAGGGAAACAGCCCAGATCACCAGCTAAGGC 1159 Query 370 CCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACAGCTAGGATGTTG 429 || ||||||| ||| ||| | | || || || | ||| ||||| | |||| ||| Sbjct 1158 TCCTAAATGACCGCTCAGTGATA--AAGGAGGTAGGGGTGCAGAGACAACCAGGAGGTTT 1101 Query 430 GCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGAGGAGTCGGGC 489 || | |||||||||| | || ||||||||||||| |||||||| ||||| || || Sbjct 1100 GCCTAGAAGCAGCCA-CCCTTGAAAGAGTGCGTAATAGCTCACTGATCGAGCGCTCTTGC 1042 Query 490 GTGGATAATAATCGGGTATTAAGTTGTCTACCGAAGCAGTGGGATCATTTATATG-ATCG 548 | || || | |||| |||| | | | ||||| ||||||| | | | | |||| Sbjct 1041 GCCGAAGATGAACGGG-GCTAAGCGATTTGCAGAAGCTGTGGGAT-GTAAAAAGGCATCG 984 Query 549 GTAGGGGAGC 558 |||||||||| Sbjct 983 GTAGGGGAGC 974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1687812352512